Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq179 91.5 2e-16 seq4084 89.7 5e-16 seq1467 86.0 6e-15 seq6032 80.6 3e-13 >seq179 Length=33312291 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 12094361 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 12094302 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | | |||||||||||| ||||| Sbjct 12094301 AATAATGGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT 12094264 >seq4084 Length=1028223 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/105 (80%), Gaps = 8/105 (8%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTA 65 || ||||||||||||||||||||| ||||||||||||| || || |||||| | Sbjct 993365 ACATTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---TGGTCACCAGAATACTCCA 993309 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 | |||||||| ||||||||| | | |||||||||||| ||||| Sbjct 993308 GCTAGGAATAATGGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT 993265 >seq1467 Length=19222777 Score = 86.0 bits (94), Expect = 6e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||| ||||||||||||| ||||| |||||| | | | Sbjct 5720089 TTTACTTTGAAAAAATTAGCATGTTCAAAGCAGGCTGGTTGCTGGAATACTCCAGCTAGC 5720148 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | || ||||||||||| ||||| Sbjct 5720149 AATAATGGAATAGGAC-TCCGTTTCTATTTTGTTGGTTT 5720186 >seq6032 Length=9105470 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||| | ||||||||||||| | ||| ||| | | | || Sbjct 6768412 TTTACTTTGAAAAAATTAGTGTGTTCAAAGCAGGCTGGTCGCTGGAAAATTCCAGCTAGG 6768353 Query 72 AATAATAGAATAGGACGTGCGGTTCTA-TTTTGTAGGTTT 110 |||||| ||||||||| | |||||||| |||||| ||||| Sbjct 6768352 AATAATGGAATAGGAC-TCCGGTTCTATTTTTGTTGGTTT 6768314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511964813760