Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1467 147 4e-33 seq1210 147 4e-33 seq6032 145 1e-32 seq4084 134 3e-29 seq6283 132 9e-29 seq2707 113 9e-23 seq179 113 9e-23 seq4037 82.4 1e-13 seq2195 82.4 1e-13 >seq1467 Length=19222777 Score = 147 bits (162), Expect = 4e-33 Identities = 190/258 (74%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTA-TCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | | || | |||| || ||||||| || |||||| |||||| Sbjct 5720718 CTTCTTAGAGGGACAAGTGGGGTTCAGCCACCCGA-GTTTGAG-CATTAACAGATCTGTG 5720775 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| |||||||||||||| | || | || | Sbjct 5720776 ATGCCCTTAGATGTCCAGGGCTGCACACGCGCTACACTGACTGGCTCAGTGTGTGTCTAC 5720835 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| || ||| | | || | | || || ||||||| | | || Sbjct 5720836 CCTACGCCGACAGGTGCGGATAACCCGTTGAACCCCATTCATGATGGGGATCAGGGACTG 5720895 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||| | |||||||||| || |||||| ||| ||||| ||| ||| || Sbjct 5720896 CAATTATTCCTCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCG----TT 5720951 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 5720952 AAGTCCCTGCCCTTTGTA 5720969 >seq1210 Length=32045156 Score = 147 bits (162), Expect = 4e-33 Identities = 167/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||| | |||| Sbjct 25433336 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACGTACACTAC 25433394 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || | || | ||| | | |||| |||||| | | || | Sbjct 25433395 ACTGACTGGCTCAGCATGTGTCTACCCTATACTGACAGGTGCGGGTAACCCATTGAACCC 25433454 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | || || |||| || | | |||||||||||| | | | |||| ||||| || |||||| Sbjct 25433455 CATTCATGATGGGAATCGGGGATTGCAATTATTTCCCATGAACGTGGAATTCCCAGTAAG 25433514 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||| | ||||||||| |||||||||||||||| Sbjct 25433515 TGCGGGTCATAAGCTCACGTTGATTAAGTCCCTGCCCTTTGTA 25433557 >seq6032 Length=9105470 Score = 145 bits (160), Expect = 1e-32 Identities = 193/260 (74%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| ||| | ||||| |||||||||||||||| Sbjct 6767789 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCGGA-GATTGAG-CAATAACAGGTCTGTG 6767732 Query 131 ATGCCCTTAGATGTTCTGGGCC-GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||| ||||| | |||| |||||||||| | | || || || | Sbjct 6767731 ATGCCCTTAGATGT-CTGGGTCTGCACATGCGCTACACTAAATGGCTCAGCGTGTGTCTA 6767673 Query 190 ACCTTGGCCGGAAGGT-CTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||| || | || | | |||||| | | | || | | | ||| || |||| | || Sbjct 6767672 CCCTGTGCTGACAGTTGCGGGGTAACCCTTTGAACCCCATTTGTGATGTGGATCAGGGAT 6767613 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | || ||||||| || |||||| || ||||| ||| | |||||| Sbjct 6767612 TGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTCACGTTGA 6767553 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 6767552 TTAAGTCCCTGCCCTTTGTA 6767533 >seq4084 Length=1028223 Score = 134 bits (148), Expect = 3e-29 Identities = 187/258 (72%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| ||||||||||||||| Sbjct 991764 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAGT-AATAACAGGTCTGTG 991707 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||| || | || |||||| | |||||||||| | || || || | Sbjct 991706 ATGCCCTTAGAGGTCCAGGATTGCACGCACACTACACTGACTGGCTCAGCGTGTGTCTAC 991647 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| ||||| || | | | | | ||| ||||||| | | |||| Sbjct 991646 CCTATGCCAACAGGTGCAGGTAACCTGTTGAGCCCCATTTGTGATGGGGATCGGGGATTG 991587 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| |||||| || |||||| ||| ||||| | | | | |||||| Sbjct 991586 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAACTCACATTGATT 991527 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||| ||||||||||| Sbjct 991526 AAGTCCTTGCCCTTTGTA 991509 >seq6283 Length=47998352 Score = 132 bits (146), Expect = 9e-29 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||| |||| | |||| ||||||||||||||||||| | || || | | ||| Sbjct 20489306 CTTATATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGCGTCTACCCTAC 20489247 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| |||| |||||| | | || | | ||||| ||||||| | | ||||||||| Sbjct 20489246 GCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 20489187 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | | |||||||||| || | |||| ||| ||||| ||| | ||||||||| ||| Sbjct 20489186 ATTCCCCATGAACGAGGAATTCCCACTAAGTGCGGGTCATAAGCTCACGTTGATTAAGTC 20489127 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 20489126 CCTGCCCTTTGTA 20489114 >seq2707 Length=1189 Score = 113 bits (124), Expect = 9e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 122 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 181 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 182 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 221 >seq179 Length=33312291 Score = 113 bits (124), Expect = 9e-23 Identities = 184/260 (71%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | | | ||| | || || ||||| ||||||||||||||| Sbjct 12093725 CTTCTTAGAGGGACAAGTGTTGTTCAGTCACCTG--AGATTGAG-CAATAACAGGTCTGT 12093669 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 | ||||||||||||| | |||| | ||| ||||||||||||| | || | || ||| Sbjct 12093668 GTTGCCCTTAGATGTCCAGGGCTGAACGTGCGCTACACTGACTGGCTCAGCACGTGTCAG 12093609 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | | | || |||| ||||||| | || | | | ||| ||||| || Sbjct 12093608 C-CGTACACCAACAGGTGTGGGTAACACGATGAATCCCATTTGTGATGGGG-------AT 12093557 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 | |||||||| | | | || ||||||| || || ||| || ||||| ||| | |||||| Sbjct 12093556 TTCAATTATTTCCCATGAATGAGGAATACCCAGGAAGTGCAGGTCATAAGCTCACGTTGA 12093497 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| || |||||| |||||| Sbjct 12093496 TTAAGTTCCTGCCTTTTGTA 12093477 >seq4037 Length=5918428 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| || |||||| ||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 1676573 AACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTT 1676632 Query 326 GTA 328 ||| Sbjct 1676633 GTA 1676635 >seq2195 Length=14595547 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | | | |||||||||| || || ||| ||| ||||| ||| | |||| Sbjct 10975065 ATTGCAATTATTCCCCATGAACGAGGAATTCCCAG-AAGTGCGGGTCATAAGCTCACGTT 10975007 Query 307 GATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||| Sbjct 10975006 GATTAAATCCCTGCCCTTTGTA 10974985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947132805632