Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4084 390 3e-106 seq179 385 1e-104 seq1467 372 9e-101 seq6032 322 1e-85 seq563 284 4e-74 seq1146 259 1e-66 seq2195 255 2e-65 seq6853 226 9e-57 seq2440 190 6e-46 seq635 178 4e-42 seq640 145 2e-32 seq4113 143 8e-32 seq1628 127 6e-27 seq3322 122 3e-25 seq6215 118 3e-24 seq4011 111 5e-22 seq4653 84.2 7e-14 >seq4084 Length=1028223 Score = 390 bits (432), Expect = 3e-106 Identities = 400/515 (78%), Gaps = 12/515 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| ||||||||||| Sbjct 993591 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTTGTCACTACC 993650 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||| || |||| |||||||||||| ||| |||||||||||||||||||||||||| | Sbjct 993651 TCCCCTGGTTGGGAGTGGGTAATTTGCACGCTTGCTGCCTTCCTTGGATGTGGTAGCCAT 993710 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||| |||||||||| || |||||||||||||||| | |||||| | Sbjct 993711 TTCTCAGGCTCCCTCTCTGGAATCGAACTCTGATTCCCCGTTACCCGTGGTCACCATGAT 993770 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||| ||||||||||||||||| ||||||||| | || ||| | Sbjct 993771 AGGCACAAAAAGTACCATCAAAAGTTGATAGGGCAGACATTTGAATGTGTCGTCACCGCC 993830 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTT 297 | || |||||||| | | ||||| || ||||||| || | | || | Sbjct 993831 ACGGGGGCATGCGATCGGCCCAAGGTTATCTAGAGTCACCAAAGAAGTTGGGGGAGCCTG 993890 Query 298 GGT---TTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTAT 351 ||| |||| ||| |||||| || | | || || ||| | | || | |||||||| Sbjct 993891 GGTTGGTTTTGGTCTGATAAATGCATGCATGCCCGGAGGTCAGCGCTTGTCGGCATGTAT 993950 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAAC 409 ||| |||||||||||||| |||||||| ||| | || | | |||| ||| ||||| Sbjct 993951 TAGATCTAGAATTACCACAGTTATCCAAGTAATGGTTGGAGCAACCAAAGGAACCATAAC 994010 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||| ||||||||| || | | ||| ||||||||||||| Sbjct 994011 TGATTTAATGAGCCATTCACAGTTTCACCATACCAGCCGTGTGTACATAGACATGCATGG 994070 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| ||||||||||||| || ||||||| Sbjct 994071 CTTAATCTTTAAGACAAGCATATG-CTCCTGGCAG 994104 >seq179 Length=33312291 Score = 385 bits (426), Expect = 1e-104 Identities = 401/515 (78%), Gaps = 16/515 (3%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || |||||||| ||||||| |||| | |||| |||| Sbjct 12094591 TACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTGTATTGTAATTTTTCATCACCACCT 12094650 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | || |||| ||||||||||| | |||||||||||||||| |||||||||||| || Sbjct 12094651 CCCTGGGTTGGGAGTGGGTAATTTGAGTGCCTGCTGCCTTCCTTAGATGTGGTAGCCATT 12094710 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | |||||||||||||| ||||| ||||||| |||||| ||||||| | | ||||||||| Sbjct 12094711 TTTCAGGCTCCCTCTCTGGAATTGAACCCTGATTCCCTGTTACCCATGGTCACCATGGTA 12094770 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC- 239 ||| | ||||||||||||||||||||||||| |||||| || |||| ||| | Sbjct 12094771 GGCACAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTTGACTG--TCATCACCGCCA 12094828 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTT 297 | ||| | |||||| | | | ||||| || ||||||| | || | | || | Sbjct 12094829 TGGAGG-CGTGCGATAGGCCTGAGGTTATCTGGAGTCACCAAAGCAGCCAGGTGAGCCTG 12094887 Query 298 GGT---TTTTTATCTAATAAA--TACACCCCTTCCGAAGTC-GGGGTTTTTAGCATGTAT 351 ||| |||| ||| ||||| | | | | | || ||| | | | || |||||||| Sbjct 12094888 GGTTGGTTTTGGTCTGATAAACGTGCGCATCCCCAGAGGTCAGCGCTCATTGGCATGTAT 12094947 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAAC 409 |||||||||||||||||| |||||||| ||| | || | | |||| ||| ||||| Sbjct 12094948 TAGCTCTAGAATTACCACTGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAACCATAAC 12095007 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||||||||||||||| | | | ||||||||||||||||| Sbjct 12095008 TGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACATGCATGG 12095067 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||||||||||||||||| |||||||||| Sbjct 12095068 CTTAATTTTTGAGACAAGCATATG-CTACTGGCAG 12095101 >seq1467 Length=19222777 Score = 372 bits (412), Expect = 9e-101 Identities = 399/518 (77%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || |||||| || |||| | ||||| ||||||||||| Sbjct 5719860 GTACTCATTCCAATTACAGGGCCTTGAAAGAGTCCAGTATTATTATTTTTTGTCACTACC 5719801 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||| ||||||| | |||||||||||||||||| ||||||||| || Sbjct 5719800 TCCCCGGGTCGGGAGTGGATAATTTGTGAGCCTGCTGCCTTCCTTGGGTGTGGTAGCTGT 5719741 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||| |||| ||||||||||||| ||||||||||||| || | |||||| | Sbjct 5719740 TTCTCAGGCTCCTTCTCTGGAATCGAACCCTGATTCCCCGTTACCTGTGGTCACCATGAT 5719681 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||| |||||||||||||||||| ||| |||| | || || | Sbjct 5719680 AGGCACAGAAAGTACCATTGAAAGTTGATAGGGCAGACATTCAAATGCATTGTCACCACC 5719621 Query 240 TCAAG--GCCATGCGATTCGT--TAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC- 294 | | | || ||| || | ||||| || ||||||| | | || | | || Sbjct 5719620 ACGGGGTGGGGTGTGATCGGTCCGAGGTTATCTAGAGTCACCAAAGCGGCCGGGCGAGCC 5719561 Query 295 ---GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATG 348 ||||||||| | ||| |||||| ||| | | || || ||| | || | ||||| Sbjct 5719560 CGGGTTGGTTTTGT-TCTGATAAATGCACGCATCCCCGGAGGTCAGCACTTGTCGGCATG 5719502 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGAT 406 |||| |||||||| |||||| |||||||| ||| | || | | |||| ||| || Sbjct 5719501 TATTCACTCTAGAACTACCACAGTTATCCAAGTAACGGTTGGAGCAACCAAAGGAACCAT 5719442 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||||||||||||||||| ||||||||||||| | | | || ||||||||||| Sbjct 5719441 AACTGATTTAATGAGCCATTCTCAGTTTCACTGTACTGGCCGTGTGTATTTAGACATGCA 5719382 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| |||||| |||||||||| Sbjct 5719381 TGGCTTAATCTTTGAGACAAACATATG-CTACTGGCAG 5719345 >seq6032 Length=9105470 Score = 322 bits (356), Expect = 1e-85 Identities = 345/449 (77%), Gaps = 13/449 (3%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 |||||| |||||||||||| |||||||||||| ||||| |||||| | | |||||||| Sbjct 6768666 GTCGGGGGTGGGTAATTTGCATGCCTGCTGCCTTTCTTGGCTGTGGTTGTCATTTCTCAG 6768725 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 ||||| |||||||||||||||||| |||||||||||||||| | |||||||||||| Sbjct 6768726 GCTCCTTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGGCACG 6768785 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 | ||||||| |||| |||||||||||| ||| ||||| || ||| | || Sbjct 6768786 GAAAGTACCATCAAAAGATGATAGGGCAGACATTCGAATGCGTTGTCACCGCCATGGGGG 6768845 Query 247 CATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GTTGGT 300 | |||||| | | ||||| || ||||||| | || || | || ||||| Sbjct 6768846 CTTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCAGCCGGACGAGCCCAGGTTGG- 6768904 Query 301 TTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTATTAGCTC 357 |||| ||| |||||| || | | || || ||| | | || | ||||||||||||||| Sbjct 6768905 TTTTGGTCTGATAAATGCATGCATCCCCAGAGGTCAGCGCTTGTCAGCATGTATTAGCTC 6768964 Query 358 TAGAATTACCACGGTTATCCATGTAGTA--AGGTACTATCAAATAAACGATAACTGATTT 415 |||||||||||| |||| | | ||| | ||| | | |||| ||| ||||||||||| Sbjct 6768965 TAGAATTACCACAGTTACCGAAGTAACAGTAGGAGCAACCAAAGGAACCATAACTGATTT 6769024 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 |||||||||||||||||||||||||| | || | |||||||||||| |||||||||| Sbjct 6769025 AATGAGCCATTCGCAGTTTCACTGTACTGGCTGTGTGTACTTAGACATGTATGGCTTAAT 6769084 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||| ||||| ||| Sbjct 6769085 CTCTGAGACAAGCATATG-GTACTGACAG 6769112 >seq563 Length=18600682 Score = 284 bits (314), Expect = 4e-74 Identities = 391/526 (74%), Gaps = 38/526 (7%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTA-CC 59 ||||||||||||||||||| || ||| || |||||| ||||| ||||||||| || Sbjct 3235864 TACTCATTCCAATTACAAGGCCTTGAAACAGTCCTGTAATGTTATTTTTTGTCACTATCC 3235923 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | || | | ||| ||||||||||| | ||||||||||||||||||||||||||||| | Sbjct 3235924 TTCCAAGGCCAGGAGTGGGTAATTTGTGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 3235983 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || ||||||||||||||| ||||| |||||| | |||| ||||| | | |||||||| Sbjct 3235984 TTTTCAGGCTCCCTCTCCAGAATCAAACCCTGAGTCCCTATTACCAGCAGTCACCATGGT 3236043 Query 180 AGGCCACTATC--------CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||| ||| ||| ||||||||||||||||||||||||| |||||| | | Sbjct 3236044 AGG-CAC-ATCGAAAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTTGAGCAAGTCT 3236101 Query 232 TCGCCGGCTCAAGGCCATGCGATTCGT--TAAGTTATTATGAATCACCAAGGAGCCCCGA 289 | || | || || ||||| ||| || | ||||| | || || | || | || Sbjct 3236102 TTACCACCACATGG-CATGCCATTGGTCAGAGGTTATAA--AAGCAGCTGGGTGAACC-- 3236156 Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCA 346 | ||||| |||| |||| |||||| || | | || || ||| | | | | || Sbjct 3236157 --CGGGTTGG-TTTTGATCTGATAAATGCATGCATCCCCAGAGGTCAGTGCTCAATGACA 3236213 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACT-ATCAAA--TA 400 ||||||| |||| ||||||||| |||||||| ||| | ||| | | |||||| | Sbjct 3236214 TGTATTAACTCTGAAATTACCACAGTTATCCAAGTA--ATGGTTGGAGTGATCAAAGGTC 3236271 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGCTTATACTTA 458 ||| | | ||||||||| |||||||| ||||||||||||| || ||| | | ||| Sbjct 3236272 AACAACAGTTGATTTAATAAGCCATTCACAGTTTCACTGTACCAGTCTTG--TGCATTTA 3236329 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| ||||||||||||||| |||| ||||||| || Sbjct 3236330 GACATGCATGGCTTGATCTTTGAGACAAGCGTATG-CTACTGGGAG 3236374 >seq1146 Length=26689656 Score = 259 bits (286), Expect = 1e-66 Identities = 201/238 (84%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || |||||||| ||||||| ||||| ||||||||||| Sbjct 22761926 GTACTCATTCCAATTACAGGGCCTCAAAAGAGTCCTGTATTGTTATTTTTTGTCACTACC 22761985 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| || |||| ||||||||||||| |||||||||| |||||||||||||||||| | Sbjct 22761986 TCCCCGGGTTGGGAGTGGGTAATTTGCGTGCCTGCTGCCGTCCTTGGATGTGGTAGCCAT 22762045 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||| ||||||||||||| ||||||| |||||| | | | |||||| Sbjct 22762046 TTCTCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCCATTACCCTTGGTCAGCATGGT 22762105 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | | | ||||||||||||||||||||||||| ||| ||||| | |||||| Sbjct 22762106 AAGTACAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGCGTCGTCGCCG 22762163 Score = 159 bits (176), Expect = 1e-36 Identities = 138/165 (84%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA--GGTACTATCAAATAA 401 |||||||||||||||||||||||||| |||||||| ||| | || | | |||| | Sbjct 22761813 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGTTGGAGCGACCAAAGGA 22761754 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACTTAG 459 || |||| |||||||||||||||||| |||||||||||| || || | ||||||| Sbjct 22761753 ACCATAATTGATTTAATGAGCCATTCACAGTTTCACTGTCCCAGCCATG--TGTACTTAG 22761696 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 22761695 ACATGCATGGCTTAATCTTTGAGACACGCATATG-CTACTGGCAG 22761652 Score = 111 bits (122), Expect = 5e-22 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| || | |||||||| |||| | ||||| | | ||| | Sbjct 22662091 TACTCATTCCAATTACAGAGCCTCAAAAGAGTCCTGCGTTGTTATTTTTCATTGCTATTT 22662150 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| ||| | | | |||||||||| ||||||||||||||||| ||||||||| ||| Sbjct 22662151 CCCCAGGTCAGAAGTAGGTAATTTGCACGCCTGCTGCCTTCCTTTAATGTGGTAGTTGTT 22662210 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 | |||| ||| ||| |||||| ||| | ||| ||| || Sbjct 22662211 TTTCAGTCTCTGTCTTTGGAATCAAACTGTGATTTCCCATT 22662251 >seq2195 Length=14595547 Score = 255 bits (282), Expect = 2e-65 Identities = 269/349 (77%), Gaps = 10/349 (3%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||| Sbjct 10976159 TATTTTTTGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCACTCCTGCTGCCTTCC 10976218 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||| |||||||||||||||||| |||||| |||||| |||||| |||| Sbjct 10976219 TTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCTGGAATCAAACCCTGATTCCCTGTTA 10976278 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | |||||||||||| | |||||||||||||| |||||||||| ||| Sbjct 10976279 CCCGTGGTCACCATGGTAGGCACAGAAAGTACCATCGAAAGTTAATAGGGCAGACATTCA 10976338 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAG 280 |||| | | |||| | || | |||||| | | ||||| || ||||||| Sbjct 10976339 AATGCGTCGTTGCCGCCATGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAA 10976398 Query 281 GAGCCCCGAAGGGC----GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC- 333 | | || | | || ||||| |||| ||| |||||| || | | || || ||| Sbjct 10976399 GCGGCCGGGCGAGCCCGGGTTGG-TTTTGGTCTGATAAATGCATGCATCCCTGGAGGTCA 10976457 Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 | | | |||||||||||||||||||||||||| |||||||| ||| Sbjct 10976458 GCGCACGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA 10976506 >seq6853 Length=49605405 Score = 226 bits (250), Expect = 9e-57 Identities = 187/227 (82%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || |||||||||||||| ||||| | |||||||| Sbjct 972729 GTACTCATTCCAATTACAGGGCCTTGAAAGAGCCCTGTATTGTTATTTTTCATCACTACC 972788 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||| ||||||| ||||||||||| || |||||||||||||| ||||||||| | || Sbjct 972789 TCCCCAGGTCGGGAGTGGGTAATTTGTGCCCCTGCTGCCTTCCTCAGATGTGGTACCTGT 972848 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || ||||||| ||||||| || | |||||||||||||| |||||| | | |||||||| Sbjct 972849 TTTTCAGGCTTCCTCTCCAGATTTAAACCCTAATTCCCCATTACCCATGGTCACCATGGT 972908 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 |||| | ||||||| ||||||||||||||||| ||||||||| Sbjct 972909 AGGCACAGAAAGTACCATCAAAAGTTGATAGGGCAGACATTTGAATG 972955 >seq2440 Length=28713372 Score = 190 bits (210), Expect = 6e-46 Identities = 147/170 (86%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATC 395 || || |||||||||||||||||||||||||| |||||||| ||| | || | | | Sbjct 8420457 TTGTTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCAACC 8420398 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATA 454 ||| ||| ||||||||||||||||||||||||||||||||||||| ||| | | | || Sbjct 8420397 AAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACTAGCT-GTATGTA 8420339 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 8420338 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 8420290 Score = 109 bits (120), Expect = 2e-21 Identities = 81/94 (86%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 ||||||| ||||| | |||||||||||||| ||| ||| |||||||| || || ||| Sbjct 6962407 CCTGTAT---TATTTTTCGTCACTACCTCCCCTGGTCAGGAGTGGGTAATCTGAGCACCT 6962351 Query 93 GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||||||||||||||||||||| |||||||| Sbjct 6962350 GCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 6962317 >seq635 Length=9171911 Score = 178 bits (196), Expect = 4e-42 Identities = 172/215 (80%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTT-AGCATGTAT 351 ||||||||| ||| |||||| ||| | | || || ||| | | | |||||| || Sbjct 8648261 GTTGGTTTTGG-TCTGATAAATGCACGCATCCCCGGAGGTCAGCACTCGTCAGCATGCAT 8648319 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||| || |||||||| ||| | || | | |||| ||| ||||| Sbjct 8648320 TAGCTCTAGAATTACTACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAACCATAAC 8648379 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||||||||||||||| | | | ||||||||||||||||| Sbjct 8648380 TGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACATGCATGG 8648439 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 8648440 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 8648473 >seq640 Length=13835840 Score = 145 bits (160), Expect = 2e-32 Identities = 157/207 (76%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| |||| | || |||| | |||||| || ||||||| |||||| Sbjct 8649893 TATTTTTCATCACTACTTCCCTGGGTTGGGAGCGAGTAATTCGCATGCCTGCTACCTTCC 8649834 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||||| || ||| | ||| |||||||||| || |||| ||||||| |||||| || | Sbjct 8649833 TTGGATATGCTAGGCTTTT-TCAGGCTCCCATTCTAGAATTGAACCCTGATTCCCTGTCA 8649775 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 || |||| |||||||||||| | |||||| |||||||||||||||||| ||| Sbjct 8649774 CCTGTTGTCACCATGGTAGGCACAGAAAGTACCATTGAAAGTTGATAGGGCAGACATTCA 8649715 Query 223 AATGAACCATCGCCGGCTCAAGGCCAT 249 |||| ||| || | | || || ||| Sbjct 8649714 AATGGGTCATTGCTGCCACAGGGGCAT 8649688 >seq4113 Length=14374134 Score = 143 bits (158), Expect = 8e-32 Identities = 107/124 (86%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | || ||||||||||| ||||| | |||||||| Sbjct 1098805 GTACTCATTCCAATTACAGGGCCTCGAACGAGCCCTGTATTGTTATTTCTCATCACTACC 1098864 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||||||||||| |||| || ||||||||||||||| ||||||||| Sbjct 1098865 TCCCCGAGTCGGGAGTGGGTAATTTGTGCGCGTGTTGCCTTCCTTGGATGCGGTAGCCGT 1098924 Query 120 TTCT 123 |||| Sbjct 1098925 TTCT 1098928 >seq1628 Length=30811505 Score = 127 bits (140), Expect = 6e-27 Identities = 138/182 (76%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 ||| || |||| ||||| | ||| ||| |||| |||| | ||||| |||||| Sbjct 25194298 GAGTCCCGTATTGTTATTTTTAATCATTACTTCCCTAGGTCGAGCATGGGTCATTTGCAT 25194239 Query 89 GCCTGCTGCCTTCCTTGGATGTGG-TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 |||||||||||||||||||||||| |||| |||| | ||||||||| ||| | ||| || Sbjct 25194238 GCCTGCTGCCTTCCTTGGATGTGGTTAGCTGTTTTTTAGGCTCCCTTTCCAGGATCAAAT 25194179 Query 148 CCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGA 207 || |||||| |||||| || | ||||| ||||| || |||||| ||||||||| Sbjct 25194178 TCTGATTCCCTGTTACCTGTGGTCACCATATTAGGCACATAAAGTACCATTGAAAGTTGA 25194119 Query 208 TA 209 || Sbjct 25194118 TA 25194117 Score = 80.6 bits (88), Expect = 8e-13 Identities = 127/179 (71%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||| ||||| ||| | | || |||| |||| |||| | ||| | |||| | || Sbjct 7878021 GTACTTGTTCCAGTTATAGGGCCTAAAAAGAGCTCTGTGT---TATCTTTTGTTGCAACA 7877965 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | || ||| || ||||||||||| | ||| ||| | ||||||||| || | | || Sbjct 7877964 TTCCTAGGTCAGGCATGGGTAATTTGTGTGCCAATTGCTTGCCTTGGATGGGGGACCTGT 7877905 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAAC-CCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||| |||| ||| || | | | | |||||| || ||| || | |||||| Sbjct 7877904 CTCTCAGGCTCCTTCTCTGGAGTCAATCTCTTGATTCCCTGTCACCTGTGGTCACCATG 7877846 >seq3322 Length=1506126 Score = 122 bits (134), Expect = 3e-25 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA--GGTACTATCAAATAAA 402 ||||||||||| ||| |||| |||| |||||||| ||| | || | | |||| || Sbjct 778369 CATGTATTAGCGCTACAATTGCCACAGTTATCCAAGTAATTGTTGGAATGAGCAAAGGAA 778428 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | ||||||||| |||||| | ||| |||||||||||||| | || |||||||||||| Sbjct 778429 CCATAACTGATGTAATGAACTATTTGCAGTTTCACTGTACTGGCTGTGTATACTTAGACA 778488 Query 463 TGCATGGCTTAATCTTTGAGA 483 |||||||||||| || ||||| Sbjct 778489 TGCATGGCTTAACCTCTGAGA 778509 >seq6215 Length=22149898 Score = 118 bits (130), Expect = 3e-24 Identities = 162/228 (71%), Gaps = 14/228 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| ||||||| | ||||||| || ||| ||||| | |||||||| Sbjct 4759081 GTACTCATTCCAGTTACAAGGTCTCAAAAGAATTCTCTATTGTTATTTTTCATCACTACC 4759022 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || ||| |||||||||||| | ||| |||| ||| |||| |||||||||| | Sbjct 4759021 GCCCCAGGTTCGGAATGGGTAATTTGCCCACCTACTGCTTTCTTTGGTTGTGGTAGCCAT 4758962 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||| |||||||| ||| | |||||||| ||||| || | |||||| | Sbjct 4758961 TTC-------------CCGGAATCAAACTCCAATTCCCCATTACCTGTGGTCACCATGTT 4758915 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| | ||| ||| ||||| ||||| ||| ||| ||||| Sbjct 4758914 AGGAACAGAAAGTACTATCAGAAGTTATTAGGGAAGACATTCAAATGA 4758867 >seq4011 Length=4690409 Score = 111 bits (122), Expect = 5e-22 Identities = 99/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| |||| |||| |||| | ||| ||| |||||||||| || |||||||| | | Sbjct 4660747 TATTT-TTGTTACTAGTTCCCTGCGTCAGGAGTGGGTAATTTATGCACCTGCTGCATACA 4660805 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||| |||||| |||| ||||||||||| ||||| | ||||| |||| | ||||||| ||| Sbjct 4660806 TTGTATGTGGCAGCCATTTCTCAGGCTGCCTCTTCAGAATCAAACCTTGATTCCCCATTA 4660865 Query 163 CCC 165 ||| Sbjct 4660866 CCC 4660868 >seq4653 Length=9744300 Score = 84.2 bits (92), Expect = 7e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||| ||||||||||| ||||||||||||| |||||||||||||||| | ||||||||| Sbjct 57051 TCTCCGGCTCCCTCTCTGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTA 56992 Query 181 G 181 | Sbjct 56991 G 56991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510292852224