Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6834 116 3e-21 seq4704 86.0 5e-12 >seq6834 Length=1011959 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| |||||||||| || || || Sbjct 384687 GGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTTTGCTG 384628 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | ||||| |||| |||||| || || ||||||||| || Sbjct 384627 GTTGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTG 384568 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||||| ||| || Sbjct 384567 GGACTCAATGATGGCGTACCAGAG 384544 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| ||||||| || | ||||| |||||||| | Sbjct 383468 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGCTCCTCCTT 383409 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || ||| ||||| |||||||||||||| ||||| || |||||||| Sbjct 383408 CCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGTA 383349 Query 66460 GATGGCGAA 66468 ||||| || Sbjct 383348 AATGGCAAA 383340 >seq4704 Length=24298902 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||||||||| ||||| || || | | || || || |||||||| || || |||| Sbjct 16875096 TGGAACGTTTTAGCCAGGAAGTACAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGA 16875155 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| |||||||| ||||| |||||||||||| | || || || || ||||||| Sbjct 16875156 TTCTCATTGAGAATGTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCA 16875212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397533627016160