Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq4581 95.1 5e-14 >seq4581 Length=80163 Score = 95.1 bits (104), Expect = 5e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | || | |||||| |||||||||||||||| ||||| || ||||||| Sbjct 28033 CTCCTTGAGGCGTGGGACGCCCAGTGTCACGTTCTTGGCCGACACGCCAGCGTAGTGGAA 28092 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||||||| ||||| || | |||| | || || || || Sbjct 28093 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCACCCAATGACTGCGCTGCCAGCGCCCCCAC 28152 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 28153 CATCTCCCCGGG 28164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084545092539012