Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq2821 178 3e-42 seq3032 136 8e-30 seq2665 136 8e-30 >seq2821 Length=3560 Score = 178 bits (196), Expect = 3e-42 Identities = 238/326 (73%), Gaps = 9/326 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69 ||||| |||||||||| |||||| ||| || ||||||| || |||||| | | || Sbjct 842 AGGGGAGTGAAATAGAACCTGAAACCGTATGCGTACAAGCAGTGGGAGCCTACTTTGTTA 901 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| |||| Sbjct 902 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 960 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || || || || ||||||||| ||||| |||||| | ||| | ||| Sbjct 961 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 1015 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-T 248 ||||| ||||||| | |||||| ||| ||||||||||||| |||||| | ||| | Sbjct 1016 ATAGACCCGAAACCGGGCGATCTATCCATGAGCAGGTTGAAGGTTAGGTAACAC-TGACT 1074 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||||||||||| |||||||||| |||||||| | || | || ||||||| Sbjct 1075 GGAGGACCGAACCCACTTCCGTTGAAAAGGCAGGGGATGACTTGTGGATCGGAGTGAAAG 1134 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || |||||| || ||| |||||| || Sbjct 1135 GCTAATCAAGCTCGGAGATAGCTGGT 1160 >seq3032 Length=2309 Score = 136 bits (150), Expect = 8e-30 Identities = 189/260 (73%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAG 137 ||| ||||||| |||||| | | ||| |||| || ||||||| ||||| | | Sbjct 1 CGTACCTTTTGTATAATGGGTCAGCGACTTAGA-GTATGCAGCGAGCTTAAG-----CCG 54 Query 138 GCCCGTT-AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG--AGTTGGTGGCGCTAGA 194 | || || || || ||||||||| || ||||||||| || ||||| || ||||| Sbjct 55 GTAGGTGGAGGCGCAGCGAAAGCGAGTCTGAACAGGGCG-CGTCAGTTGCATGCTCTAGA 113 Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGA 254 | |||||||| ||||||| ||| | ||||||||||| |||||||| || ||||||| Sbjct 114 CCCGAAACCTGATGATCTAGCCATGGGCAGGTTGAAGGTGCGGTAACACGCACTGGAGGA 173 Query 255 CCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314 |||||| |||||||| | |||||| | || ||||||||||||||||| Sbjct 174 CCGAACTCACGCCTGTTGAAAAAGTCGGAGATGACCTGTGGCTAGGGGTGAAAGGCCAAG 233 Query 315 CAAACTGGGAAATAGCTCGT 334 |||| |||||||||| || Sbjct 234 CAAAGCAGGAAATAGCTGGT 253 Score = 75.2 bits (82), Expect = 2e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 221 GCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTT 280 ||||||||||| |||||||| || ||||||||||||| |||||||| | Sbjct 268 GCAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACTCACGCCTGTTGAAAAAGTC 327 Query 281 TCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||| | || ||||||||||||||||| |||| |||||||||| || Sbjct 328 GGAGATGACCTGTGGCTAGGGGTGAAAGGCCAAGCAAAGCAGGAAATAGCTGGT 381 >seq2665 Length=5473 Score = 136 bits (150), Expect = 8e-30 Identities = 237/341 (70%), Gaps = 19/341 (6%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | || |||||| | | | Sbjct 2754 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTAGGAGCCTCGCAAGG-G 2812 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 2813 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 2871 Query 131 GCTTC----AGGCC---CGTTAGC---------CGAAGTGAAAGCGAGCCTTAACAGGGC 174 | | |||| || ||| || || ||||||||| | || ||||| Sbjct 2872 GTATAGGGAAGGCGTAGCGAAAGCGAGTCAAGGCGTAGCGAAAGCGAGTCCGAATAGGGC 2931 Query 175 GACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC 233 || ||| | ||| ||||| ||||||| ||||||||| || | |||| ||||| Sbjct 2932 GATTCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACTCATGGCCAGGATGAAGGT 2991 Query 234 GCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGC 293 || ||||| || |||||| ||||||| || |||||||| || |||||| | Sbjct 2992 GCCGTAACAGGTACTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGT 3051 Query 294 GGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| || |||||| |||||||||| || Sbjct 3052 GGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 3092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972709364224