Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 178 3e-42
seq3032 136 8e-30
seq2665 136 8e-30
>seq2821
Length=3560
Score = 178 bits (196), Expect = 3e-42
Identities = 238/326 (73%), Gaps = 9/326 (3%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69
||||| |||||||||| |||||| ||| || ||||||| || |||||| | | ||
Sbjct 842 AGGGGAGTGAAATAGAACCTGAAACCGTATGCGTACAAGCAGTGGGAGCCTACTTTGTTA 901
Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
|||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| ||||
Sbjct 902 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 960
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | || || || || ||||||||| ||||| |||||| | ||| | |||
Sbjct 961 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 1015
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-T 248
||||| ||||||| | |||||| ||| ||||||||||||| |||||| | ||| |
Sbjct 1016 ATAGACCCGAAACCGGGCGATCTATCCATGAGCAGGTTGAAGGTTAGGTAACAC-TGACT 1074
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||||||||||| |||||||||| |||||||| | || | || |||||||
Sbjct 1075 GGAGGACCGAACCCACTTCCGTTGAAAAGGCAGGGGATGACTTGTGGATCGGAGTGAAAG 1134
Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334
|| |||||| || ||| |||||| ||
Sbjct 1135 GCTAATCAAGCTCGGAGATAGCTGGT 1160
>seq3032
Length=2309
Score = 136 bits (150), Expect = 8e-30
Identities = 189/260 (73%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAG 137
||| ||||||| |||||| | | ||| |||| || ||||||| ||||| | |
Sbjct 1 CGTACCTTTTGTATAATGGGTCAGCGACTTAGA-GTATGCAGCGAGCTTAAG-----CCG 54
Query 138 GCCCGTT-AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG--AGTTGGTGGCGCTAGA 194
| || || || || ||||||||| || ||||||||| || ||||| || |||||
Sbjct 55 GTAGGTGGAGGCGCAGCGAAAGCGAGTCTGAACAGGGCG-CGTCAGTTGCATGCTCTAGA 113
Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGA 254
| |||||||| ||||||| ||| | ||||||||||| |||||||| || |||||||
Sbjct 114 CCCGAAACCTGATGATCTAGCCATGGGCAGGTTGAAGGTGCGGTAACACGCACTGGAGGA 173
Query 255 CCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314
|||||| |||||||| | |||||| | || |||||||||||||||||
Sbjct 174 CCGAACTCACGCCTGTTGAAAAAGTCGGAGATGACCTGTGGCTAGGGGTGAAAGGCCAAG 233
Query 315 CAAACTGGGAAATAGCTCGT 334
|||| |||||||||| ||
Sbjct 234 CAAAGCAGGAAATAGCTGGT 253
Score = 75.2 bits (82), Expect = 2e-11
Identities = 85/114 (75%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 221 GCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTT 280
||||||||||| |||||||| || ||||||||||||| |||||||| |
Sbjct 268 GCAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACTCACGCCTGTTGAAAAAGTC 327
Query 281 TCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||| | || ||||||||||||||||| |||| |||||||||| ||
Sbjct 328 GGAGATGACCTGTGGCTAGGGGTGAAAGGCCAAGCAAAGCAGGAAATAGCTGGT 381
>seq2665
Length=5473
Score = 136 bits (150), Expect = 8e-30
Identities = 237/341 (70%), Gaps = 19/341 (6%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| ||| | || ||||| | || |||||| | | |
Sbjct 2754 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCATACAAACAGTAGGAGCCTCGCAAGG-G 2812
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
||||| |||| ||||||| |||||| | | ||| ||| ||| || || ||||
Sbjct 2813 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 2871
Query 131 GCTTC----AGGCC---CGTTAGC---------CGAAGTGAAAGCGAGCCTTAACAGGGC 174
| | |||| || ||| || || ||||||||| | || |||||
Sbjct 2872 GTATAGGGAAGGCGTAGCGAAAGCGAGTCAAGGCGTAGCGAAAGCGAGTCCGAATAGGGC 2931
Query 175 GACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC 233
|| ||| | ||| ||||| ||||||| ||||||||| || | |||| |||||
Sbjct 2932 GATTCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACTCATGGCCAGGATGAAGGT 2991
Query 234 GCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGC 293
|| ||||| || |||||| ||||||| || |||||||| || |||||| |
Sbjct 2992 GCCGTAACAGGTACTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGT 3051
Query 294 GGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||||||||||||||| || |||||| |||||||||| ||
Sbjct 3052 GGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 3092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972709364224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |