Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq846 192 9e-47 seq554 174 2e-41 seq242 165 1e-38 seq29 159 5e-37 seq165 143 4e-32 seq102 140 5e-31 seq685 138 2e-30 seq707 134 2e-29 seq156 114 2e-23 >seq846 Length=882505 Score = 192 bits (212), Expect = 9e-47 Identities = 186/234 (79%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 488214 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 488271 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 488272 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 488331 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 488332 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 488391 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 488392 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 488444 >seq554 Length=1445144 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| || |||||| |||||| | Sbjct 592580 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCACTTACTGGGAATT-C 592637 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 592638 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 592697 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||| ||| ||| | | || | ||| ||||||||||||||||||| Sbjct 592698 ACCCGCACCTGTTGGCGTAGGGTAGACACATGCTGAGCCAATCAGTGTAGCGCGCGTGCA 592757 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 592758 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 592810 >seq242 Length=2598833 Score = 165 bits (182), Expect = 1e-38 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| ||| |||||| |||||| | Sbjct 1437363 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1437306 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 | |||| | | || ||||||||| | |||||||||| || ||||| | || Sbjct 1437305 CGCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGTTCAATGGGTT 1437246 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || | ||| ||||||||| || ||||| Sbjct 1437245 ACCCGCACCTGTCGGCATAGGGTAGACACATGCTGAGCCAGTCAGTGTAGTGCACGTGCA 1437186 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1437185 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1437133 >seq29 Length=5344911 Score = 159 bits (176), Expect = 5e-37 Identities = 170/219 (78%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| |||||||| ||||| ||| |||||| |||||| | Sbjct 4436182 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 4436125 Query 61 CTCGTTGAAGACC-AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118 |||||| | || ||||||||| | |||||||| | || ||||| | | Sbjct 4436124 CTCGTTCATTTTGGAATAATTGCAATCCCCGATCCCCATTATGAATGGGGTTCAACGGGT 4436065 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| |||||||||| ||| | | || || ||| | ||||||||||| |||||| Sbjct 4436064 TACCCACACCTGTCGGCGTAGGGTAGACACACGCTGAGTCACTCAGTGTAGCGTGCGTGC 4436005 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 4436004 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4435966 >seq165 Length=3102812 Score = 143 bits (158), Expect = 4e-32 Identities = 179/238 (75%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| | || ||| ||||| | | |||||| | |||| | Sbjct 1782815 GTACAAAGGGCAGGGACTTAATCAATGTGATCTT-ATGACCCACACTTACTGGCAATT-C 1782872 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 ||||| | | || ||||||||| | |||||||| | |||| ||||| | Sbjct 1782873 CTCGTCCATGGG-AATAATTGCAATCCCCAATCCCCATTAT----AAATGGGGTTCAATG 1782927 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||| || ||||||| || ||| | | || || ||| ||||||||||||||| Sbjct 1782928 GGTTACACGCACCTGTCAGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCG 1782987 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | |||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 1782988 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 1783044 >seq102 Length=3752443 Score = 140 bits (154), Expect = 5e-31 Identities = 179/238 (75%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || |||| | |||||| ||||| || |||||| |||||| || Sbjct 2604453 TACAAAGGGCAGGGACTTAATCAATGTGAGCTT-ATGACCTGCACTTACTGGGAATT-CC 2604396 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117 || || | | || ||||||||| | |||| |||||| |||| ||||| | Sbjct 2604395 TCATTCATGGGGAATAATTGCAATCCCCGATCCACATCAC----AAATGGGGTTCAATGG 2604340 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| | ||||| || ||| | | || || ||| | |||||||| | ||| Sbjct 2604339 GTTACCCGCAACTGTCAGCACAGGGTAGACACACGCTGAGCCAGTTAGTGTAGCACACGT 2604280 Query 177 GCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || | |||||| ||||||||||||||||||||||||||||| ||||| || | ||||| Sbjct 2604279 GCAGACCCAGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCGGTGGC 2604224 >seq685 Length=1154951 Score = 138 bits (152), Expect = 2e-30 Identities = 177/238 (74%), Gaps = 16/238 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||| || |||| ||||| ||||| ||| |||||| |||||| | Sbjct 548894 GTACAAAGGGTAGGGACTTA----ACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 548841 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || ||||||| | ||||||||||| |||| ||||| | Sbjct 548840 CTCGTTCATGGGGAATAATTGCAGTCCCTAATCCCCATCAC----AAATGGGGTTCAACG 548785 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||| || |||||||||| ||| | | || | ||| ||||||||||| | | Sbjct 548784 GGTTATCCACACCTGTCGGCGTAGGGTAGACACACACTGAGCCAGTCAGTGTAGCGTGTG 548725 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | ||||||||||||||||||||||||||| || ||||||||| ||||| Sbjct 548724 TGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTAATG-CTCAAACTTGGGTGGC 548668 >seq707 Length=1104143 Score = 134 bits (148), Expect = 2e-29 Identities = 176/238 (74%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| || | || |||| | ||| || ||||| ||| |||||| |||||| | Sbjct 964667 GTACAAAGGGCAAGGTCTTAATCAATGTGAGTTT-ATGACCCGCACTTACTGGGAATT-C 964724 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT----TCAA-A 115 || ||| | | || ||||||||| | ||||||||||| |||| |||| | Sbjct 964725 CTTGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGCTCAACA 964780 Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 | ||||| | |||||| ||| ||| | | || || ||| ||||||||| ||||| Sbjct 964781 GGTTACCTGCACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGAGCGCG 964840 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| || | || ||||||||||||||||||||||||||| ||||| || ||||| Sbjct 964841 TGCAATCCTGGACCTCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 964897 >seq156 Length=3147509 Score = 114 bits (126), Expect = 2e-23 Identities = 168/228 (74%), Gaps = 15/228 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| || ||| | || ||| | Sbjct 2541711 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCACTTCGTGGGTATT-C 2541768 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118 ||| || | | || ||||| ||| ||||||||| | || ||| || | | Sbjct 2541769 CTCATTCATGGGGAATAATTGAAAT-------CCCCATCACAAATGGGATT-CATCGTGT 2541820 Query 119 TACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||||| || | | ||| | || | ||| |||||||||||| |||| Sbjct 2541821 TACCCACACCTGTTGGTGTATG-GATGACACATGCTGAGCCAGTCAGTGTAGCGCACGTG 2541879 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 2541880 CAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2541926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751932125655