Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq846 192 9e-47
seq554 174 2e-41
seq242 165 1e-38
seq29 159 5e-37
seq165 143 4e-32
seq102 140 5e-31
seq685 138 2e-30
seq707 134 2e-29
seq156 114 2e-23
>seq846
Length=882505
Score = 192 bits (212), Expect = 9e-47
Identities = 186/234 (79%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| |
Sbjct 488214 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 488271
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 488272 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 488331
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 488332 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 488391
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 488392 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 488444
>seq554
Length=1445144
Score = 174 bits (192), Expect = 2e-41
Identities = 182/234 (78%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||||| |||||| ||||| || |||||| |||||| |
Sbjct 592580 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCACTTACTGGGAATT-C 592637
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 592638 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 592697
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||| ||| ||| | | || | ||| |||||||||||||||||||
Sbjct 592698 ACCCGCACCTGTTGGCGTAGGGTAGACACATGCTGAGCCAATCAGTGTAGCGCGCGTGCA 592757
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 592758 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 592810
>seq242
Length=2598833
Score = 165 bits (182), Expect = 1e-38
Identities = 180/234 (77%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||||| |||||| ||||| ||| |||||| |||||| |
Sbjct 1437363 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1437306
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
| |||| | | || ||||||||| | |||||||||| || ||||| | ||
Sbjct 1437305 CGCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCATGAATGGGGTTCAATGGGTT 1437246
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || | ||| ||||||||| || |||||
Sbjct 1437245 ACCCGCACCTGTCGGCATAGGGTAGACACATGCTGAGCCAGTCAGTGTAGTGCACGTGCA 1437186
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1437185 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1437133
>seq29
Length=5344911
Score = 159 bits (176), Expect = 5e-37
Identities = 170/219 (78%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| |||||||| ||||| ||| |||||| |||||| |
Sbjct 4436182 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 4436125
Query 61 CTCGTTGAAGACC-AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118
|||||| | || ||||||||| | |||||||| | || ||||| | |
Sbjct 4436124 CTCGTTCATTTTGGAATAATTGCAATCCCCGATCCCCATTATGAATGGGGTTCAACGGGT 4436065
Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||||| |||||||||| ||| | | || || ||| | ||||||||||| ||||||
Sbjct 4436064 TACCCACACCTGTCGGCGTAGGGTAGACACACGCTGAGTCACTCAGTGTAGCGTGCGTGC 4436005
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | |||||||||||||||||||||||||||||||
Sbjct 4436004 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4435966
>seq165
Length=3102812
Score = 143 bits (158), Expect = 4e-32
Identities = 179/238 (75%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| | || ||| ||||| | | |||||| | |||| |
Sbjct 1782815 GTACAAAGGGCAGGGACTTAATCAATGTGATCTT-ATGACCCACACTTACTGGCAATT-C 1782872
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
||||| | | || ||||||||| | |||||||| | |||| ||||| |
Sbjct 1782873 CTCGTCCATGGG-AATAATTGCAATCCCCAATCCCCATTAT----AAATGGGGTTCAATG 1782927
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
|||| || ||||||| || ||| | | || || ||| |||||||||||||||
Sbjct 1782928 GGTTACACGCACCTGTCAGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCG 1782987
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| | |||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1782988 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGGGTGGC 1783044
>seq102
Length=3752443
Score = 140 bits (154), Expect = 5e-31
Identities = 179/238 (75%), Gaps = 14/238 (6%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || |||| | |||||| ||||| || |||||| |||||| ||
Sbjct 2604453 TACAAAGGGCAGGGACTTAATCAATGTGAGCTT-ATGACCTGCACTTACTGGGAATT-CC 2604396
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAGA 117
|| || | | || ||||||||| | |||| |||||| |||| ||||| |
Sbjct 2604395 TCATTCATGGGGAATAATTGCAATCCCCGATCCACATCAC----AAATGGGGTTCAATGG 2604340
Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||||| | ||||| || ||| | | || || ||| | |||||||| | |||
Sbjct 2604339 GTTACCCGCAACTGTCAGCACAGGGTAGACACACGCTGAGCCAGTTAGTGTAGCACACGT 2604280
Query 177 GCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| | |||||| ||||||||||||||||||||||||||||| ||||| || | |||||
Sbjct 2604279 GCAGACCCAGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCCGGTGGC 2604224
>seq685
Length=1154951
Score = 138 bits (152), Expect = 2e-30
Identities = 177/238 (74%), Gaps = 16/238 (7%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| |||||| || |||| ||||| ||||| ||| |||||| |||||| |
Sbjct 548894 GTACAAAGGGTAGGGACTTA----ACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 548841
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|||||| | | || ||||||| | ||||||||||| |||| ||||| |
Sbjct 548840 CTCGTTCATGGGGAATAATTGCAGTCCCTAATCCCCATCAC----AAATGGGGTTCAACG 548785
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
||| || |||||||||| ||| | | || | ||| ||||||||||| | |
Sbjct 548784 GGTTATCCACACCTGTCGGCGTAGGGTAGACACACACTGAGCCAGTCAGTGTAGCGTGTG 548725
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| | ||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 548724 TGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTAATG-CTCAAACTTGGGTGGC 548668
>seq707
Length=1104143
Score = 134 bits (148), Expect = 2e-29
Identities = 176/238 (74%), Gaps = 12/238 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||| || | || |||| | ||| || ||||| ||| |||||| |||||| |
Sbjct 964667 GTACAAAGGGCAAGGTCTTAATCAATGTGAGTTT-ATGACCCGCACTTACTGGGAATT-C 964724
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT----TCAA-A 115
|| ||| | | || ||||||||| | ||||||||||| |||| |||| |
Sbjct 964725 CTTGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGCTCAACA 964780
Query 116 GATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
| ||||| | |||||| ||| ||| | | || || ||| ||||||||| |||||
Sbjct 964781 GGTTACCTGCACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTAGAGCGCG 964840
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| || | || ||||||||||||||||||||||||||| ||||| || |||||
Sbjct 964841 TGCAATCCTGGACCTCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 964897
>seq156
Length=3147509
Score = 114 bits (126), Expect = 2e-23
Identities = 168/228 (74%), Gaps = 15/228 (7%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||||| |||||| ||||| || ||| | || ||| |
Sbjct 2541711 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCTGCACTTCGTGGGTATT-C 2541768
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGA-T 118
||| || | | || ||||| ||| ||||||||| | || ||| || | |
Sbjct 2541769 CTCATTCATGGGGAATAATTGAAAT-------CCCCATCACAAATGGGATT-CATCGTGT 2541820
Query 119 TACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177
||||| |||||| || | | ||| | || | ||| |||||||||||| ||||
Sbjct 2541821 TACCCACACCTGTTGGTGTATG-GATGACACATGCTGAGCCAGTCAGTGTAGCGCACGTG 2541879
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
| |||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 2541880 CAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2541926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751932125655
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