Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq707 113 3e-23 seq554 113 3e-23 seq156 78.8 5e-13 seq165 71.6 8e-11 >seq707 Length=1104143 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 966178 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 966237 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 966238 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 966294 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||| ||||||||||| |||| | || ||| || | |||| |||||| |||| Sbjct 965198 GAACGCAAAGACTTTGGTTTCCCAGAAACCGCCCAGTGGGTCATGGGAATAACACCGCCG 965257 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||||| |||| ||||| |||| |||| || ||| ||||||||||||||| Sbjct 965258 GATCACTAGTCAGCATTGTTTATGGTTGGAACTATGATGGTGTCTGATCGTCTTCGA 965314 >seq554 Length=1445144 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 593111 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 593170 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 593171 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 593227 >seq156 Length=3147509 Score = 78.8 bits (86), Expect = 5e-13 Identities = 90/120 (75%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATG---ATAACATCG 57 ||||||||||| |||| |||| || ||| |||| ||| || |||| ||||| | Sbjct 2542235 GAACCCAAAGAGTTTGGTTTCCCGGAAGCTGCCTGGCGGGT---AATGGGAATAACGCTG 2542291 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| |||||| |||| |||| | | | |||| ||||||||||||||||||| || Sbjct 2542292 CTGGATCACTAGTCAGCATCATTTATGATCAGAACTATGACGGTATCTGATCGTCTTTGA 2542351 >seq165 Length=3102812 Score = 71.6 bits (78), Expect = 8e-11 Identities = 86/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| | | |||| ||||| | | Sbjct 1783345 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCTGGTGGGTCATGGGAATAACGCCACGG 1783404 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| | ||| |||| ||||||||| |||| || Sbjct 1783405 GATCTCTAGTTGGCATTGTTTATGGTCAGAACTGCGACAGTATCTGATTATCTTTGA 1783461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278375682630