Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq707 113 3e-23
seq554 113 3e-23
seq156 78.8 5e-13
seq165 71.6 8e-11
>seq707
Length=1104143
Score = 113 bits (124), Expect = 3e-23
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| ||| |||| ||||| ||||
Sbjct 966178 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 966237
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 966238 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 966294
Score = 86.0 bits (94), Expect = 3e-15
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||| ||||||||||| |||| | || ||| || | |||| |||||| ||||
Sbjct 965198 GAACGCAAAGACTTTGGTTTCCCAGAAACCGCCCAGTGGGTCATGGGAATAACACCGCCG 965257
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| |||||| |||| ||||| |||| |||| || ||| |||||||||||||||
Sbjct 965258 GATCACTAGTCAGCATTGTTTATGGTTGGAACTATGATGGTGTCTGATCGTCTTCGA 965314
>seq554
Length=1445144
Score = 113 bits (124), Expect = 3e-23
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| ||| |||| ||||| ||||
Sbjct 593111 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 593170
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 593171 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 593227
>seq156
Length=3147509
Score = 78.8 bits (86), Expect = 5e-13
Identities = 90/120 (75%), Gaps = 6/120 (5%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATG---ATAACATCG 57
||||||||||| |||| |||| || ||| |||| ||| || |||| ||||| |
Sbjct 2542235 GAACCCAAAGAGTTTGGTTTCCCGGAAGCTGCCTGGCGGGT---AATGGGAATAACGCTG 2542291
Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
| |||| |||||| |||| |||| | | | |||| ||||||||||||||||||| ||
Sbjct 2542292 CTGGATCACTAGTCAGCATCATTTATGATCAGAACTATGACGGTATCTGATCGTCTTTGA 2542351
>seq165
Length=3102812
Score = 71.6 bits (78), Expect = 8e-11
Identities = 86/117 (74%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| | ||| |||| | | |||| ||||| | |
Sbjct 1783345 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCTGGTGGGTCATGGGAATAACGCCACGG 1783404
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||| ||||| ||||| ||| | ||| |||| ||||||||| |||| ||
Sbjct 1783405 GATCTCTAGTTGGCATTGTTTATGGTCAGAACTGCGACAGTATCTGATTATCTTTGA 1783461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278375682630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |