Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq554 183 6e-44 seq707 179 7e-43 seq686 176 8e-42 seq165 149 1e-33 seq685 143 5e-32 seq156 143 5e-32 seq367 118 2e-24 seq102 113 8e-23 seq1522 91.5 3e-16 >seq554 Length=1445144 Score = 183 bits (202), Expect = 6e-44 Identities = 208/275 (76%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 593507 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 593448 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 593447 CAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 593389 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 593388 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 593329 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| ||| | |||||||| || Sbjct 593328 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTT 593269 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 593268 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 593235 >seq707 Length=1104143 Score = 179 bits (198), Expect = 7e-43 Identities = 207/275 (75%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| | || ||||||||||||||||||||||||| Sbjct 966574 ATGCTCTTAACTGAGTGTCCTGGGGGTCTGAAACGTTTACTTTGAAAAAATTAGAGTGTT 966515 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || |||||| ||| ||||||| ||||||||| | |||||| Sbjct 966514 CAAAGCAGGCTGGTCGCCAGAATACTCCAGCTAGGAATAACGGAATAGGAC-TCCGGTTC 966456 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 966455 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 966396 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| ||| | |||||||| || Sbjct 966395 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTT 966336 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 966335 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 966302 >seq686 Length=1154353 Score = 176 bits (194), Expect = 8e-42 Identities = 207/276 (75%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 101478 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 101537 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 101538 CAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 101596 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| |||| | |||||| | ||| Sbjct 101597 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGGGGGACGGCCGGGGGCATTCGTA 101656 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| | | |||| ||| | | |||||| || Sbjct 101657 TTGTGCCGCTAGAGGTGAAATTCTTGGACTGGTGCCAGACAAACCAAAGTGAAAGCATTT 101716 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| |||||||||||||||| ||| ||||||| Sbjct 101717 GCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTT 101751 >seq165 Length=3102812 Score = 149 bits (164), Expect = 1e-33 Identities = 186/248 (75%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCAT 130 ||||||||||||||| |||||||||||||||||| ||| |||| |||||| ||| Sbjct 1783705 TTTACTTTGAAAAAAATTAGAGTGTTCAAAGCAG-CCTGGTTGCCAGAATACTCCAGCTA 1783647 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||| |||| ||| |||||||||||||||||||| | | || | | ||| | Sbjct 1783646 AGAATAATT-AATAAGACT--CGGTTCTATTTTGTTGGTTTTTGGAACTGGGGCCATGGT 1783590 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| |||||| | ||||| | ||||| || |||||| ||||||||||| | Sbjct 1783589 TAAGAGGGATGGCTGGGGGCATTCGTATTGTGCTGCTAGAGGTTAAATTCTTGGACTGGC 1783530 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||||||| | | |||||| || ||||| | |||||||||||||| ||| |||| Sbjct 1783529 ACAAGACTAACCAAAGTGAAAGCATTTTCCAAGAACGTTTTCATTAATCA-AGAATGAAA 1783471 Query 311 GTTAGGGG 318 || || || Sbjct 1783470 GTCAGAGG 1783463 >seq685 Length=1154951 Score = 143 bits (158), Expect = 5e-32 Identities = 202/277 (73%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| | ||||| | | | | ||||||||||||||||||| ||| Sbjct 547972 ATGCTCTTAACTGAGTGTCCTGGGGATCT-GAAGTGTTTACTTTGAAAAAATTAGCATGT 548030 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| ||||| |||||| ||| | |||||| ||||||||| | || || Sbjct 548031 TCAAAGCAGGCTGGTTGCTGGAATACTCCAGCTAGCAATAATGGAATAGGAC-TCCGTTT 548089 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | | |||||||| ||||| | ||| | | || Sbjct 548090 CTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCTGGGAGCATTTGT 548149 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 | | | |||||| ||||| ||||| |||| ||| | |||||||| || Sbjct 548150 ACTGTGCCGCTAGAGGTAAAATTTTTGGACCAGCGCAAGATGAACCAAAGCGAAAGCATT 548209 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||||| |||||||||||||||| |||| |||||| Sbjct 548210 TGCCAAGAATGTTTTCATTAATCA-AGAACAAAAGTT 548245 >seq156 Length=3147509 Score = 143 bits (158), Expect = 5e-32 Identities = 204/282 (72%), Gaps = 15/282 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 2542631 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCATTTACTTTGAAAAAATTAGAGTGTT 2542572 Query 99 CAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||| || || || |||||| ||| |||||| ||||||||| | | | Sbjct 2542571 CAAAGCAAGC---TGATCACCGGAATACTCCAGCTACGAATAACGGAATAGGAC-TCCAG 2542516 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | ||||| | Sbjct 2542515 TTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAAAGGGACGGCTGGGGGCATTC 2542456 Query 215 GTATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 |||| || | |||| ||||||||||||| | ||||| ||| | | |||| Sbjct 2542455 CTATT---GTGACACTAGAGCTGAAATTCTTGGACCAGTGCAAGACAAACCAAAGTGAAA 2542399 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || ||||| |||||||||||||||| |||||||||| Sbjct 2542398 GCATTTGCCAAGAATGTTTTCATTAATCA-AAAACGAAAGTT 2542358 >seq367 Length=2037526 Score = 118 bits (130), Expect = 2e-24 Identities = 126/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAA 134 ||||||||||||||||||||||||||||||||| | || |||||| ||| |||| Sbjct 1627531 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAA 1627590 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||| ||||||||| | |||||||||||||||||||| | || | | |||||||| Sbjct 1627591 TAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAG 1627649 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 ||||| | |||||| | ||||| | ||||||||||| Sbjct 1627650 AGGGACGGCCGGGGGCATTCGTATTATGCCGCGAGAGGTGAAAT 1627693 >seq102 Length=3752443 Score = 113 bits (124), Expect = 8e-23 Identities = 174/247 (70%), Gaps = 20/247 (8%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGG 132 |||||| |||||||||||||||||||||||||||| | || ||| | ||| || Sbjct 2603578 TTTACTCTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAAAATTCCAGCTAGG 2603637 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTT-TGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||| ||||||||| | | ||||||||| ||||||||| | | || | | || ||| Sbjct 2603638 AATAATGGAATAGGAC-TCCAGTTCTATTTATGTTGGTTTTTGGAACTGGGGCCATTATT 2603696 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || |||||| | | ||| | ||||||||||||||||| Sbjct 2603697 AAGAGGGATGGCCAGGG----------------GCTAGAGGTGAAATTCTTGGGCCGGCG 2603740 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||| || | |||||||| || ||||| |||||||||||||||| |||| |||| Sbjct 2603741 CAAGATGAATCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAG 2603799 Query 312 TTAGGGG 318 | || || Sbjct 2603800 TCAGAGG 2603806 >seq1522 Length=189187 Score = 91.5 bits (100), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAATACATTAGCATGGAA 134 ||| ||||||||||||| ||||||||| ||||| | || |||||| ||| |||| Sbjct 129426 TACATTGAAAAAATTAGCGTGTTCAAA-CAGGCTGGTCACTAGAATACTCCAGCTAGGAA 129368 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAA 193 ||| |||||| | | || |||||| |||| |||| ||||| | | | |||| ||| Sbjct 129367 CAATGGAATAGCAT-TCTGGGTCTATTGTGTTTGTTT-TAGGAACTGGGGCCATGAATAA 129310 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| | | |||| | ||||| | ||||||||||||||||||| | Sbjct 129309 GAGGGATGGCCAGGGGCATTCGTATTATGCCGCTAGAGGTGAAATTCTTGGATGGGGGCA 129250 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 |||| || | || |||| ||| ||||| ||||||| Sbjct 129249 AGACAAATGAAAGCAAAAGAGTTTGCCAAGAATGTTTT 129212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915114730816