Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 98.7 9e-19
seq2821 93.3 4e-17
>seq2665
Length=5473
Score = 98.7 bits (108), Expect = 9e-19
Identities = 138/186 (74%), Gaps = 7/186 (4%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| | ||||||||||| ||| | |||||| ||||||||| || ||||| ||||
Sbjct 2283 GCACATGGTGGATGCCTTGGCGATGTCAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 2342
Query 62 TACGGGGATTG-GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120
| |||||| | ||| | ||| ||||||||| |||| ||||||||||| |||||| |
Sbjct 2343 TGCGGGGAGCGAGCAAACACGCATTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCTT 2402
Query 121 TT-GGAGAT-ATA-TCATAACGC-TAGGCGT--TAGGCGAACGTGGGGAACTGAAACATC 174
|| || || || || || | |||| | | ||||||| || |||||||||||||
Sbjct 2403 TTAGGTCATCGTATTCTGAATACATAGGAATACGAAGCGAACGCGGCGAACTGAAACATC 2462
Query 175 TAAGTA 180
||||||
Sbjct 2463 TAAGTA 2468
>seq2821
Length=3560
Score = 93.3 bits (102), Expect = 4e-17
Identities = 139/192 (72%), Gaps = 14/192 (7%)
Strand=Plus/Plus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| ||| ||||||||| |||||| ||||
Sbjct 376 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGATAAGC 435
Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATA- 118
| ||| || ||||| || ||| ||| |||| || |||||||| ||||| ||
Sbjct 436 TTCGGTGAGGTGGCAAATGACCTGTGACCCGGAGATCTCTGAATGGGGGAACCCACCTAG 495
Query 119 TATTGGAGATATATCATAA-------CGCTAGGCGTT---AGGCGAACGTGGGGAACTGA 168
|| | | |||| ||| | |||| ||| |||||||| ||||||||||
Sbjct 496 CATAAGCTAGGTATCTTAACCTGAATCCATAGG-GTTAAGAGGCGAACCAGGGGAACTGA 554
Query 169 AACATCTAAGTA 180
||||||||||||
Sbjct 555 AACATCTAAGTA 566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476756964777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |