Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2665 98.7 9e-19 seq2821 93.3 4e-17 >seq2665 Length=5473 Score = 98.7 bits (108), Expect = 9e-19 Identities = 138/186 (74%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||| || ||||| |||| Sbjct 2283 GCACATGGTGGATGCCTTGGCGATGTCAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 2342 Query 62 TACGGGGATTG-GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||| | ||| | ||| ||||||||| |||| ||||||||||| |||||| | Sbjct 2343 TGCGGGGAGCGAGCAAACACGCATTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCTT 2402 Query 121 TT-GGAGAT-ATA-TCATAACGC-TAGGCGT--TAGGCGAACGTGGGGAACTGAAACATC 174 || || || || || || | |||| | | ||||||| || ||||||||||||| Sbjct 2403 TTAGGTCATCGTATTCTGAATACATAGGAATACGAAGCGAACGCGGCGAACTGAAACATC 2462 Query 175 TAAGTA 180 |||||| Sbjct 2463 TAAGTA 2468 >seq2821 Length=3560 Score = 93.3 bits (102), Expect = 4e-17 Identities = 139/192 (72%), Gaps = 14/192 (7%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| ||||||||| |||||| |||| Sbjct 376 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGATAAGC 435 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATA- 118 | ||| || ||||| || ||| ||| |||| || |||||||| ||||| || Sbjct 436 TTCGGTGAGGTGGCAAATGACCTGTGACCCGGAGATCTCTGAATGGGGGAACCCACCTAG 495 Query 119 TATTGGAGATATATCATAA-------CGCTAGGCGTT---AGGCGAACGTGGGGAACTGA 168 || | | |||| ||| | |||| ||| |||||||| |||||||||| Sbjct 496 CATAAGCTAGGTATCTTAACCTGAATCCATAGG-GTTAAGAGGCGAACCAGGGGAACTGA 554 Query 169 AACATCTAAGTA 180 |||||||||||| Sbjct 555 AACATCTAAGTA 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476756964777