Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 178 2e-42
seq3032 159 5e-37
seq2665 122 1e-25
>seq2821
Length=3560
Score = 178 bits (196), Expect = 2e-42
Identities = 191/251 (76%), Gaps = 5/251 (2%)
Strand=Plus/Minus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| |||||| |||||||||||||||| || ||||| || |||| | || || |||
Sbjct 2203 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 2145
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121
| ||||||||||| ||||||||||| | || | ||| ||||| || |||| |
Sbjct 2144 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 2085
Query 122 CACGT----CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177
|| | |||||| || ||| | ||||||||||||||||||| |||||||||||
Sbjct 2084 GGGGTAAACCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCC 2025
Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237
| |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||||
Sbjct 2024 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCGACCACCTGTGTC 1965
Query 238 GGTTTACGGTA 248
||||| ||||
Sbjct 1964 GGTTTGGGGTA 1954
>seq3032
Length=2309
Score = 159 bits (176), Expect = 5e-37
Identities = 187/248 (75%), Gaps = 11/248 (4%)
Strand=Plus/Minus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACC-GTCTTCGCAC 60
||| |||||| ||||||||||||||||| || ||||| ||| | | || | |||||||
Sbjct 1299 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCATGCCAGACTTCGCAG 1240
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| |||||||||||||||||||||||| ||| || ||| ||| || | || |||
Sbjct 1239 AGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCCGCCCCTGCTTG 1180
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| || | | | ||| || ||||||||||||||||| || || ||||||||
Sbjct 1179 ------CG--CAGGAACGG-GGC-CCTCTTCTCCCGAAGTTACGAGGGCAATTTGCCGAG 1130
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||| | ||| ||| | | | ||||| |||| ||||||||| ||||||||||||||
Sbjct 1129 TTCCTTCAACACCATTCTCTCAAGCGCCTGGGTATGCTCTACCTGTCCACCTGTGTCGGT 1070
Query 241 TTACGGTA 248
|| ||||
Sbjct 1069 TTCGGGTA 1062
>seq2665
Length=5473
Score = 122 bits (134), Expect = 1e-25
Identities = 180/248 (73%), Gaps = 8/248 (3%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| || |||| | || || ||| | ||
Sbjct 4120 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 4062
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAG-CTCAA-C 122
||||||||| ||||||||||| || | || ||| ||| | |||| || |
Sbjct 4061 GTGTTTTTATTAAACAGTCGCAGCCACCAGTTTATTGCAACCCCGTCACCCTTCTGGCGC 4002
Query 123 ACGTCGTTCA--CCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| | | ||| | | ||| ||| |||| |||||||||||||| ||| ||||||||
Sbjct 4001 AGGCCAGTCAAGCTACCAG-GGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGAG 3943
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||| || ||||| | | | |||||||| || ||| | | ||||||||||||||
Sbjct 3942 TTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGGT 3883
Query 241 TTACGGTA 248
|| |||||
Sbjct 3882 TTGCGGTA 3875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694337324541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |