Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2821 178 2e-42 seq3032 159 5e-37 seq2665 122 1e-25 >seq2821 Length=3560 Score = 178 bits (196), Expect = 2e-42 Identities = 191/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 2203 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 2145 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || | ||| ||||| || |||| | Sbjct 2144 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 2085 Query 122 CACGT----CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || | |||||| || ||| | ||||||||||||||||||| ||||||||||| Sbjct 2084 GGGGTAAACCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCC 2025 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||| |||||||||||| ||||||||||||| Sbjct 2024 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCGACCACCTGTGTC 1965 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 1964 GGTTTGGGGTA 1954 >seq3032 Length=2309 Score = 159 bits (176), Expect = 5e-37 Identities = 187/248 (75%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACC-GTCTTCGCAC 60 ||| |||||| ||||||||||||||||| || ||||| ||| | | || | ||||||| Sbjct 1299 TTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCATGCCAGACTTCGCAG 1240 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||||||||||||||| ||| || ||| ||| || | || ||| Sbjct 1239 AGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTGCCCCCCGCCCCTGCTTG 1180 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || | | | ||| || ||||||||||||||||| || || |||||||| Sbjct 1179 ------CG--CAGGAACGG-GGC-CCTCTTCTCCCGAAGTTACGAGGGCAATTTGCCGAG 1130 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | ||| ||| | | | ||||| |||| ||||||||| |||||||||||||| Sbjct 1129 TTCCTTCAACACCATTCTCTCAAGCGCCTGGGTATGCTCTACCTGTCCACCTGTGTCGGT 1070 Query 241 TTACGGTA 248 || |||| Sbjct 1069 TTCGGGTA 1062 >seq2665 Length=5473 Score = 122 bits (134), Expect = 1e-25 Identities = 180/248 (73%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 4120 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 4062 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC--CACCAG-CTCAA-C 122 ||||||||| ||||||||||| || | || ||| ||| | |||| || | Sbjct 4061 GTGTTTTTATTAAACAGTCGCAGCCACCAGTTTATTGCAACCCCGTCACCCTTCTGGCGC 4002 Query 123 ACGTCGTTCA--CCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | ||| | | ||| ||| |||| |||||||||||||| ||| |||||||| Sbjct 4001 AGGCCAGTCAAGCTACCAG-GGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGAG 3943 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| || ||||| | | | |||||||| || ||| | | |||||||||||||| Sbjct 3942 TTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGGT 3883 Query 241 TTACGGTA 248 || ||||| Sbjct 3882 TTGCGGTA 3875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694337324541