Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq3032 91.5 2e-16
seq2821 91.5 2e-16
seq2665 80.6 3e-13
>seq3032
Length=2309
Score = 91.5 bits (100), Expect = 2e-16
Identities = 129/179 (72%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || | | ||| || |||| ||||||||||| |||| | | ||||
Sbjct 1068 AAACCGACACAGGTGGACAGGTAGAGCATACCCAGGCGCTTGAGAGAATGGTGTTGAAGG 1127
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-TAC-----CCAGAAAT 137
|||| |||||| || || |||||||||||| || |||| ||| | | | || |
Sbjct 1128 AACTCGGCAAATTGCCCTCGTAACTTCGGGAGAAGAGGGCCCCGTTCCTGCGCAAGCAGG 1187
Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
|| ||| ||| ||| ||| ||| |||||||| |||||||||||||| ||| ||
Sbjct 1188 GGCGGGGGGCACAGACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAA 1246
>seq2821
Length=3560
Score = 91.5 bits (100), Expect = 2e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || ||||||| || |||| |||||||||||| ||| ||| |||
Sbjct 1959 CAAACCGACACAGGTGGTCGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 2018
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
|||||||||||| || | | |||||||||||| ||
Sbjct 2019 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 2053
>seq2665
Length=5473
Score = 80.6 bits (88), Expect = 3e-13
Identities = 76/97 (78%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
||||||| |||||| || | || | ||| ||| |||||||||||||| ||| || |
Sbjct 3878 CGCAAACCGACACAGGTGGGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCGGGAGA 3937
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
||||||| |||||| || | |||||||||||||||
Sbjct 3938 AGGAACTCGGCAAATTGGTACCGTAACTTCGGGATAA 3974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531152054718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |