Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq3032 91.5 2e-16 seq2821 91.5 2e-16 seq2665 80.6 3e-13 >seq3032 Length=2309 Score = 91.5 bits (100), Expect = 2e-16 Identities = 129/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| ||||||||||| |||| | | |||| Sbjct 1068 AAACCGACACAGGTGGACAGGTAGAGCATACCCAGGCGCTTGAGAGAATGGTGTTGAAGG 1127 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-TAC-----CCAGAAAT 137 |||| |||||| || || |||||||||||| || |||| ||| | | | || | Sbjct 1128 AACTCGGCAAATTGCCCTCGTAACTTCGGGAGAAGAGGGCCCCGTTCCTGCGCAAGCAGG 1187 Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||| ||| ||| ||| ||| |||||||| |||||||||||||| ||| || Sbjct 1188 GGCGGGGGGCACAGACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAA 1246 >seq2821 Length=3560 Score = 91.5 bits (100), Expect = 2e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||||||| || |||| |||||||||||| ||| ||| ||| Sbjct 1959 CAAACCGACACAGGTGGTCGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 2018 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 2019 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 2053 >seq2665 Length=5473 Score = 80.6 bits (88), Expect = 3e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | || | ||| ||| |||||||||||||| ||| || | Sbjct 3878 CGCAAACCGACACAGGTGGGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCGGGAGA 3937 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||| |||||| || | ||||||||||||||| Sbjct 3938 AGGAACTCGGCAAATTGGTACCGTAACTTCGGGATAA 3974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531152054718