Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 230 2e-58
seq2665 152 5e-35
seq3032 98.7 9e-19
>seq2821
Length=3560
Score = 230 bits (254), Expect = 2e-58
Identities = 127/127 (100%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 32 CCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGC 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 CCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGC 2142
Query 92 ACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 ACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTA 2202
Query 152 ATTGATG 158
|||||||
Sbjct 2203 ATTGATG 2209
>seq2665
Length=5473
Score = 152 bits (168), Expect = 5e-35
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4038 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 4097
Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158
||||||||||||||||| ||||| |||| |||||
Sbjct 4098 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 4131
>seq3032
Length=2309
Score = 98.7 bits (108), Expect = 9e-19
Identities = 81/98 (83%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACAC--GAAAGTGGAC 114
|||||| | ||||||||||| ||||||||||| |||||| || | | | | |||
Sbjct 1202 ACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGTCTGGCATGACGAC 1261
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||||| ||||||||||||||||||||||||||||
Sbjct 1262 GTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476756964777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |