Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2821 230 2e-58 seq2665 152 5e-35 seq3032 98.7 9e-19 >seq2821 Length=3560 Score = 230 bits (254), Expect = 2e-58 Identities = 127/127 (100%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 32 CCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGC 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2083 CCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGC 2142 Query 92 ACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTA 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2143 ACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTA 2202 Query 152 ATTGATG 158 ||||||| Sbjct 2203 ATTGATG 2209 >seq2665 Length=5473 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4038 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 4097 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 4098 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 4131 >seq3032 Length=2309 Score = 98.7 bits (108), Expect = 9e-19 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACAC--GAAAGTGGAC 114 |||||| | ||||||||||| ||||||||||| |||||| || | | | | ||| Sbjct 1202 ACCAGGGGGTGGCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGTCTGGCATGACGAC 1261 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| |||||||||||||||||||||||||||| Sbjct 1262 GTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476756964777