Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2821 719 0.0 seq2665 437 2e-120 seq3032 318 1e-84 >seq2821 Length=3560 Score = 719 bits (796), Expect = 0.0 Identities = 415/426 (97%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2397 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 2338 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2337 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2278 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 2277 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGC 2218 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2217 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 2158 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2157 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 2098 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 2097 GGCATGAGCTTACGGGGTAAACCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 2038 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2037 GTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 1978 Query 421 AACCAC 426 ||||| Sbjct 1977 GACCAC 1972 >seq2665 Length=5473 Score = 437 bits (484), Expect = 2e-120 Identities = 351/418 (84%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||| ||||| ||||||| ||| |||||||||||| |||||||| Sbjct 4310 CGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGT 4251 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4250 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4191 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 4190 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 4136 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 4135 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 4080 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || || | || | | Sbjct 4079 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACC-AGTTTATTGCAAC 4021 Query 301 GGCATGA-GCTTACGGAGCAAGTCCTTCACCCTCACC--GGCGCACCTTCTCCCGAAGTT 357 | | | ||| || ||| | | ||| || ||| |||| ||||| |||||||||| Sbjct 4020 CCCGTCACCCTTCTGGCGCAGGCCAGTCAAGCT-ACCAGGGCGTACCTTATCCCGAAGTT 3962 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||||| || |||||| ||||||||| |||||||||||||||||||||| | || ||| Sbjct 3961 ACGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 3904 >seq3032 Length=2309 Score = 318 bits (352), Expect = 1e-84 Identities = 327/428 (76%), Gaps = 26/428 (6%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||| | |||||||||| | || ||||||||| |||||| | |||||||||| Sbjct 1497 CGCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCGCTGAGTTGGTGTTGGAGACAGC 1438 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1378 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG----- 175 ||||||||||||| ||||||||||||||||||||||||||| | | |||||| Sbjct 1377 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAGTTTGGGGCTTCGACCCC 1318 Query 176 -CGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGT 234 | | || ||||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct 1317 CCCCTTGC--ACCCCTCCCTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGT 1260 Query 235 CCACTTTC--GTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 | | | | | || |||||| ||||||||||| ||||||||||| | |||||| | Sbjct 1259 CGTCATGCCAGACTTCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCT 1200 Query 293 CTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCAC-CTTCTCCC 351 | | || || |||| || || || ||| || | |||||||| Sbjct 1199 GTGCCCCCCGCCCCTGCTTGCGCAGGAA---------------CGGGGCCCTCTTCTCCC 1155 Query 352 GAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411 ||||||||| | | |||||| ||||||||| | ||||||||||||||| ||||| Sbjct 1154 GAAGTTACGAGGGCAATTTGCCGAGTTCCTTCAACACCATTCTCTCAAGCGCCTGGGTAT 1095 Query 412 TCTCTACC 419 ||||||| Sbjct 1094 GCTCTACC 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260682531264