Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 719 0.0
seq2665 437 2e-120
seq3032 318 1e-84
>seq2821
Length=3560
Score = 719 bits (796), Expect = 0.0
Identities = 415/426 (97%), Gaps = 0/426 (0%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 2338
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2278
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2277 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGC 2218
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 2158
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 2098
Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360
||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GGCATGAGCTTACGGGGTAAACCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 2038
Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2037 GTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 1978
Query 421 AACCAC 426
|||||
Sbjct 1977 GACCAC 1972
>seq2665
Length=5473
Score = 437 bits (484), Expect = 2e-120
Identities = 351/418 (84%), Gaps = 14/418 (3%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| || | |||||| ||||| ||||||| ||| |||||||||||| ||||||||
Sbjct 4310 CGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGT 4251
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4250 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4191
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| ||
Sbjct 4190 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 4136
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 4135 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 4080
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
||||||||||||||||||||||||||| |||||||||||||| || || | || | |
Sbjct 4079 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACC-AGTTTATTGCAAC 4021
Query 301 GGCATGA-GCTTACGGAGCAAGTCCTTCACCCTCACC--GGCGCACCTTCTCCCGAAGTT 357
| | | ||| || ||| | | ||| || ||| |||| ||||| ||||||||||
Sbjct 4020 CCCGTCACCCTTCTGGCGCAGGCCAGTCAAGCT-ACCAGGGCGTACCTTATCCCGAAGTT 3962
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415
||||| || |||||| ||||||||| |||||||||||||||||||||| | || |||
Sbjct 3961 ACGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 3904
>seq3032
Length=2309
Score = 318 bits (352), Expect = 1e-84
Identities = 327/428 (76%), Gaps = 26/428 (6%)
Strand=Plus/Minus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| ||| | |||||||||| | || ||||||||| |||||| | ||||||||||
Sbjct 1497 CGCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCGCTGAGTTGGTGTTGGAGACAGC 1438
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1378
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG----- 175
||||||||||||| ||||||||||||||||||||||||||| | | ||||||
Sbjct 1377 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAGTTTGGGGCTTCGACCCC 1318
Query 176 -CGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGT 234
| | || ||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1317 CCCCTTGC--ACCCCTCCCTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGT 1260
Query 235 CCACTTTC--GTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292
| | | | | || |||||| ||||||||||| ||||||||||| | |||||| |
Sbjct 1259 CGTCATGCCAGACTTCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCT 1200
Query 293 CTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCAC-CTTCTCCC 351
| | || || |||| || || || ||| || | ||||||||
Sbjct 1199 GTGCCCCCCGCCCCTGCTTGCGCAGGAA---------------CGGGGCCCTCTTCTCCC 1155
Query 352 GAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411
||||||||| | | |||||| ||||||||| | ||||||||||||||| |||||
Sbjct 1154 GAAGTTACGAGGGCAATTTGCCGAGTTCCTTCAACACCATTCTCTCAAGCGCCTGGGTAT 1095
Query 412 TCTCTACC 419
|||||||
Sbjct 1094 GCTCTACC 1087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260682531264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |