Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000750.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
seq587 176 2e-42
seq531 176 2e-42
seq42 176 2e-42
seq29 152 2e-35
seq405 145 4e-33
seq165 131 8e-29
seq8 131 8e-29
seq743 122 4e-26
seq685 116 2e-24
seq276 75.2 5e-12
>seq587
Length=1367565
Score = 176 bits (194), Expect = 2e-42
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439081 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 439140
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 439141 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 439182
>seq531
Length=1503200
Score = 176 bits (194), Expect = 2e-42
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890842 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 890783
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 890782 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 890741
>seq42
Length=4865435
Score = 176 bits (194), Expect = 2e-42
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429957 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 2430016
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2430017 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 2430058
>seq29
Length=5344911
Score = 152 bits (168), Expect = 2e-35
Identities = 93/99 (94%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4438996 GGAAAAGAAAATAATTAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCTCAGCG 4439055
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99
||||||||||| ||||||||||||||||||| |||||||
Sbjct 4439056 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGC 4439094
>seq405
Length=1880284
Score = 145 bits (160), Expect = 4e-33
Identities = 92/100 (92%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 609369 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCACC 609310
Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
|||||||| || || ||||||||||||| | ||||| ||
Sbjct 609309 GAATCCCCATCCTGCAGTGGGGCGCGGGAAACGTGGCATA 609270
>seq165
Length=3102812
Score = 131 bits (144), Expect = 8e-29
Identities = 90/102 (88%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2092461 GGAAAAGAAACTAACCAGGATTCCTTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCG 2092402
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
| ||||||| | || | | |||||| | ||| |||||| |||
Sbjct 2092401 CTGAATCCCTGTCCTGTGATGGGGCACAGGAAATGTGGTGTA 2092360
>seq8
Length=6970170
Score = 131 bits (144), Expect = 8e-29
Identities = 91/102 (89%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 218113 GGAAAA-AAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAATCGCCCAGCA 218055
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
| ||||||||| ||| | ||||||||| ||| |||||| |||
Sbjct 218054 CTGAATCCCCGTCCCACAGTGGGGCGCAGGAAATGTGGTGTA 218013
>seq743
Length=1054728
Score = 122 bits (134), Expect = 4e-26
Identities = 88/102 (86%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||
Sbjct 9904 GGAAAAGAAACTAACTAGGATTCCCTCAGTAATGGTGAATGAACAGGGAAGAGCCCAGCA 9845
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
| |||| || | | ||||||||| ||||| ||||||||||
Sbjct 9844 CTGAATTCCTGTTCTGCGGTGGGGTACGGGAAATGTGGCGTA 9803
>seq685
Length=1154951
Score = 116 bits (128), Expect = 2e-24
Identities = 87/102 (85%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 553267 GGAAAAGAAACTAACCAGGACTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGTG 553326
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
|||||||| || || ||| || | |||| || ||| |||
Sbjct 553327 TTGAATCCCCATCCTGCAGTGAGGTGTGGGAAATATGGTGTA 553368
>seq276
Length=2426465
Score = 75.2 bits (82), Expect = 5e-12
Identities = 77/98 (79%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61
||||||||| ||| |||||||| ||||||||| || ||| ||||||||||| ||||| |
Sbjct 979013 GAAAAGAAATTAATCAGGATTCTCTCAGTAACAGCAAGTAAACAGGGAAGA-CCCAGTAC 979071
Query 62 CGAATCCC-CGCCCCGCGGTGGGGCGCGGGACATGTGG 98
| |||||| | ||| | |||| | || | ||||||
Sbjct 979072 CAAATCCCTGGTCCCATGTTGGGATGGGGAAAATGTGG 979109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230379875280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |