Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq587 176 2e-42 seq531 176 2e-42 seq42 176 2e-42 seq29 152 2e-35 seq405 145 4e-33 seq165 131 8e-29 seq8 131 8e-29 seq743 122 4e-26 seq685 116 2e-24 seq276 75.2 5e-12 >seq587 Length=1367565 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439081 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 439140 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 439141 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 439182 >seq531 Length=1503200 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 890842 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 890783 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 890782 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 890741 >seq42 Length=4865435 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2429957 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 2430016 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 2430017 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 2430058 >seq29 Length=5344911 Score = 152 bits (168), Expect = 2e-35 Identities = 93/99 (94%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4438996 GGAAAAGAAAATAATTAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCTCAGCG 4439055 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGC 99 ||||||||||| ||||||||||||||||||| ||||||| Sbjct 4439056 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGC 4439094 >seq405 Length=1880284 Score = 145 bits (160), Expect = 4e-33 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 609369 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCACC 609310 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||| || || ||||||||||||| | ||||| || Sbjct 609309 GAATCCCCATCCTGCAGTGGGGCGCGGGAAACGTGGCATA 609270 >seq165 Length=3102812 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 2092461 GGAAAAGAAACTAACCAGGATTCCTTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGCG 2092402 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||| | || | | |||||| | ||| |||||| ||| Sbjct 2092401 CTGAATCCCTGTCCTGTGATGGGGCACAGGAAATGTGGTGTA 2092360 >seq8 Length=6970170 Score = 131 bits (144), Expect = 8e-29 Identities = 91/102 (89%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 218113 GGAAAA-AAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAATCGCCCAGCA 218055 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||||| ||| | ||||||||| ||| |||||| ||| Sbjct 218054 CTGAATCCCCGTCCCACAGTGGGGCGCAGGAAATGTGGTGTA 218013 >seq743 Length=1054728 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| || || |||||||||||||||||||| Sbjct 9904 GGAAAAGAAACTAACTAGGATTCCCTCAGTAATGGTGAATGAACAGGGAAGAGCCCAGCA 9845 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||| || | | ||||||||| ||||| |||||||||| Sbjct 9844 CTGAATTCCTGTTCTGCGGTGGGGTACGGGAAATGTGGCGTA 9803 >seq685 Length=1154951 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct 553267 GGAAAAGAAACTAACCAGGACTCCCTCAGTAATGGCGAGTGAACAGGGAAGAGCCCAGTG 553326 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||| || || ||| || | |||| || ||| ||| Sbjct 553327 TTGAATCCCCATCCTGCAGTGAGGTGTGGGAAATATGGTGTA 553368 >seq276 Length=2426465 Score = 75.2 bits (82), Expect = 5e-12 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 ||||||||| ||| |||||||| ||||||||| || ||| ||||||||||| ||||| | Sbjct 979013 GAAAAGAAATTAATCAGGATTCTCTCAGTAACAGCAAGTAAACAGGGAAGA-CCCAGTAC 979071 Query 62 CGAATCCC-CGCCCCGCGGTGGGGCGCGGGACATGTGG 98 | |||||| | ||| | |||| | || | |||||| Sbjct 979072 CAAATCCCTGGTCCCATGTTGGGATGGGGAAAATGTGG 979109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230379875280