Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq3032 284 3e-74
seq2821 282 9e-74
seq2665 215 1e-53
>seq3032
Length=2309
Score = 284 bits (314), Expect = 3e-74
Identities = 291/378 (77%), Gaps = 28/378 (7%)
Strand=Plus/Minus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCA 59
||| | |||||||||| | || | ||||||| | |||| | ||||| |||||| | |
Sbjct 1491 TACTCCGCATCTTCACGGAGAATTCAATTTCGCTGAGT-TGGTGTTGGAGACAGCGGGGA 1433
Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119
| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 1373
Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGA--------T 171
||||||||||||||||||||||||||| ||||||| |||| ||||||| |
Sbjct 1372 ACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAGTTTGGGGCTTCGACCCCCCCCT 1313
Query 172 TGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGT 231
||| || |||| |||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 1312 TGC----ACCCCTCCCTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGT 1257
Query 232 CTTGC--GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289
| ||| ||||| ||||| ||||||||||| |||||||||||| ||| ||| ||
Sbjct 1256 CATGCCAGACTTCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTG 1197
Query 290 CGGCCTG-----------TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338
| || | || || || || |||||||| |||||||| || || ||
Sbjct 1196 CCCCCCGCCCCTGCTTGCGCAGGAACGGGGCCCTCTTCTCCCGAAGTTACGAGGGCAATT 1137
Query 339 TGCCGAGTTCCTT-AACA 355
||||||||||||| ||||
Sbjct 1136 TGCCGAGTTCCTTCAACA 1119
>seq2821
Length=3560
Score = 282 bits (312), Expect = 9e-74
Identities = 294/390 (75%), Gaps = 27/390 (7%)
Strand=Plus/Minus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
||| | |||||||||| | |||| ||||||||| |||||| || ||||||| |||
Sbjct 2391 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 2332
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2272
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
|||||||||||||||||||||||||| ||||||| | | |||||| |||| |||||
Sbjct 2271 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAAC 2212
Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240
| |||||||||| ||||||||||||||||| ||||||| || ||| || |
Sbjct 2211 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 2152
Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300
| ||||| |||||||||| ||||||||||| ||||| | ||| || || | |||
Sbjct 2151 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCAT 2093
Query 301 -AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334
|| || ||| | ||||||||| ||||||||| | |
Sbjct 2092 GAGCTTACGGGGTAAACCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 2033
Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364
|||||||| |||||||| || |||||||
Sbjct 2032 ATTTTGCCTAGTTCCTTCACCCGAGTTCTC 2003
>seq2665
Length=5473
Score = 215 bits (238), Expect = 1e-53
Identities = 209/267 (78%), Gaps = 9/267 (3%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
||||| |||| ||| ||| ||| | |||||| | ||||||||| ||||||
Sbjct 4298 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTT 4239
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4238 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4179
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
|||||||||||||||||||||||| ||| | | | || |||| | | || |
Sbjct 4178 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 4128
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| ||||||||||||||||||||||| ||||||| || ||| || || ||||
Sbjct 4127 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 4068
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273
| |||||||||| |||||||||||
Sbjct 4067 AGTGCTGTGTTTTTATTAAACAGTCGC 4041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062301016192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |