Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3032 284 3e-74 seq2821 282 9e-74 seq2665 215 1e-53 >seq3032 Length=2309 Score = 284 bits (314), Expect = 3e-74 Identities = 291/378 (77%), Gaps = 28/378 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTG-AGACAGTGCCCA 59 ||| | |||||||||| | || | ||||||| | |||| | ||||| |||||| | | Sbjct 1491 TACTCCGCATCTTCACGGAGAATTCAATTTCGCTGAGT-TGGTGTTGGAGACAGCGGGGA 1433 Query 60 AATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 | |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1432 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 1373 Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGA--------T 171 ||||||||||||||||||||||||||| ||||||| |||| ||||||| | Sbjct 1372 ACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAGTTTGGGGCTTCGACCCCCCCCT 1313 Query 172 TGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGT 231 ||| || |||| |||||||||| |||||||||||||||||| ||||||| |||| Sbjct 1312 TGC----ACCCCTCCCTTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGT 1257 Query 232 CTTGC--GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 | ||| ||||| ||||| ||||||||||| |||||||||||| ||| ||| || Sbjct 1256 CATGCCAGACTTCGCAGAGCCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTGGTCTGTG 1197 Query 290 CGGCCTG-----------TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338 | || | || || || || |||||||| |||||||| || || || Sbjct 1196 CCCCCCGCCCCTGCTTGCGCAGGAACGGGGCCCTCTTCTCCCGAAGTTACGAGGGCAATT 1137 Query 339 TGCCGAGTTCCTT-AACA 355 ||||||||||||| |||| Sbjct 1136 TGCCGAGTTCCTTCAACA 1119 >seq2821 Length=3560 Score = 282 bits (312), Expect = 9e-74 Identities = 294/390 (75%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| ||| Sbjct 2391 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 2332 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2331 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2272 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | | |||||| |||| ||||| Sbjct 2271 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAAC 2212 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 2211 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 2152 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||||| |||||||||| ||||||||||| ||||| | ||| || || | ||| Sbjct 2151 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCAT 2093 Query 301 -AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || ||| | ||||||||| ||||||||| | | Sbjct 2092 GAGCTTACGGGGTAAACCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 2033 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||| |||||||| || ||||||| Sbjct 2032 ATTTTGCCTAGTTCCTTCACCCGAGTTCTC 2003 >seq2665 Length=5473 Score = 215 bits (238), Expect = 1e-53 Identities = 209/267 (78%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | ||||||||| |||||| Sbjct 4298 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTT 4239 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4238 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4179 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 4178 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 4128 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 4127 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 4068 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 4067 AGTGCTGTGTTTTTATTAAACAGTCGC 4041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062301016192