Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2665 466 5e-129 >seq2665 Length=5473 Score = 466 bits (516), Expect = 5e-129 Identities = 402/496 (81%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 1017 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 1076 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||| ||||||||| |||||||||| ||||||||| | |||||||| || || | Sbjct 1077 GTGGATTAATTCGATGCAACGCGAAAAACCTTACCTACCCTTGACATGGAAGGAATCCCC 1136 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | || | | | | | || ||||||| ||||||| ||||||||| Sbjct 1137 GAGAGATTGGGGAGTGCTCGAAAGAGAACCTTTACACAGGTGCTGCATGGCTGTCGTCAG 1196 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 1197 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCTTGTCATTAGTTGC 1256 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 | | ||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1257 TACGA--AAG---GGCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAT 1311 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||||| | ||||| ||||||| |||||||| |||| Sbjct 1312 GACGTCAAGTCCTCATGGCCCTTATGGGTAGGGCTTCACACGTCATACAATGGTACATAC 1371 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | ||||| || || |||||||| ||| ||||||| ||||| || ||| ||||||| Sbjct 1372 AGAGGGCTGCCAACCCGCGAGGGGGAGCTAATCCCAGAAAGTGTATCGTAGTCCGGATTG 1431 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||||||||| |||||| |||||||||||||||||| |||||||||| | Sbjct 1432 GAGTCTGCAACTCGACTCCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGTCGC 1491 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 1492 GGTGAATACGTTCCCG 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503859872320