Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq554 250 4e-64 seq846 233 3e-59 seq165 224 2e-56 seq156 224 2e-56 seq707 212 1e-52 seq102 208 1e-51 seq685 206 4e-51 seq37 167 4e-39 seq242 165 1e-38 seq150 154 2e-35 seq423 138 2e-30 seq467 132 8e-29 seq313 132 8e-29 seq335 102 1e-19 seq29 86.0 1e-14 seq62 84.2 3e-14 seq243 73.4 6e-11 seq55 73.4 6e-11 >seq554 Length=1445144 Score = 250 bits (276), Expect = 4e-64 Identities = 208/251 (83%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || Sbjct 592739 TCAGTGTAGCGCGCGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 592797 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| ||| Sbjct 592798 AATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TCG 592854 Query 136 ATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 |||| ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 592855 --GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 592912 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 592913 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCT 592972 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 592973 ATCAATCTGTC 592983 >seq846 Length=882505 Score = 233 bits (258), Expect = 3e-59 Identities = 208/257 (81%), Gaps = 19/257 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 488372 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 488430 Query 75 CAAACTTCCATTGGCTGGAAGC-----CAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 ||| || | ||||| | | || | |||||||||||||| | | || ||| Sbjct 488431 CAATCT-CGGGTGGCTTGTCCCTTGTCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCG 488489 Query 130 TAGTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| |||| ||| |||||| | | ||||||||||||||||||||||| Sbjct 488490 C--TCG--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAA 488545 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 488546 CCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAA 488605 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 488606 AGAGCTATCAATCTGTC 488622 >seq165 Length=3102812 Score = 224 bits (248), Expect = 2e-56 Identities = 203/252 (81%), Gaps = 14/252 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 1782972 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1783030 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| | ||||| | |||| | |||||||||||||| | ||| ||| || Sbjct 1783031 CAATCTTGGGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACTGACCGC--TC 1783087 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | ||||||||| ||||| |||||||||| | Sbjct 1783088 G--GGGGTTGCATAACTAGTTAGCATGCCAGAGTCTCGTTCATTATCAGAATTAACCAAA 1783145 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| ||||||||||| ||||| |||||||||||||||||| ||||| ||||| ||| Sbjct 1783146 CAAATCGCTCCACCAACTGAGAACAGCCATGCACCACCACCCACAGAATTGAGAAACAGC 1783205 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 1783206 TATCAATCTGTC 1783217 >seq156 Length=3147509 Score = 224 bits (248), Expect = 2e-56 Identities = 203/252 (81%), Gaps = 14/252 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2541862 GTCAGTGTAGCGCACGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2541920 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | || ||| | || | |||||||||||||| | | || || | || Sbjct 2541921 CAATCT-CAGGTGACTGAACAACACTTGTCCCTCTAAGAAGTTGGACGCCGAC--TGCTC 2541977 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | ||||| ||||||||| |||||||||||| Sbjct 2541978 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCATTCGTTATCAGAATTAACCAGA 2542035 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||| Sbjct 2542036 CAAATCACTCCACCAACTAAGAATGGCCATGCACCACCACCCACACAATCAAGACAGAGC 2542095 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 2542096 TATCAATCTGTC 2542107 >seq707 Length=1104143 Score = 212 bits (234), Expect = 1e-52 Identities = 200/250 (80%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||||||| || | || |||||||||||||||||||||||||||| | Sbjct 964825 GTCAGTGTAGAGCGCGTGCAATCCTGGACCTCTAAGGGCATCACAGACCTGTTATTGC-T 964883 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA--- 131 ||| || | |||||| | |||| | |||||||||||||| | | || |||| Sbjct 964884 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCACTCAG 964942 Query 132 --GTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 |||| || ||| |||||| | |||| |||| |||| ||||||||||||||| Sbjct 964943 GGGTCGCATAA--CTAGTTAGCATTCCAGAGTCTTGTTCATTATTGGAATTAACCAGACA 965000 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| Sbjct 965001 AATTTCTCCACCAACTAAGAACGGCCATGCATCACCACCCACAGAATCGAGAAAGAGCTA 965060 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 965061 TCAATCTGTC 965070 >seq102 Length=3752443 Score = 208 bits (230), Expect = 1e-51 Identities = 200/249 (80%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || |||||||| | ||||| | |||||| |||||||||||||||||||||||||||||| Sbjct 2604296 GTTAGTGTAGCACACGTGCAGACCCAGA-CATCTAAGGGCATCACAGACCTGTTATTGC- 2604239 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAG 132 |||| || || |||||| | |||| | ||||||||||||| | | |||| | | Sbjct 2604238 TCAATCT-CCGGTGGCTGAACGCCACTTGTCCCTCTAAGAACATGGATGCTGACCACTTG 2604180 Query 133 TCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | | ||| |||||| | | ||||| ||| |||||||||||||||| |||| Sbjct 2604179 GGGCTCGCATAACTAGTTAGCATGCCAGAGTCTCATTCATTATCGGAATTAACCAAACAA 2604120 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| | Sbjct 2604119 ATCACTCCACCAACTAAGAACGGCCATGCACCATCACCCAGAGAATCGAGAAAGAGCTGT 2604060 Query 250 CAATCTGTC 258 || |||||| Sbjct 2604059 CAGTCTGTC 2604051 >seq685 Length=1154951 Score = 206 bits (228), Expect = 4e-51 Identities = 199/251 (79%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| | |||| |||| | ||||||||||||||||||||||||||| ||| | Sbjct 548740 GTCAGTGTAGCGTGTGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTAATGC-T 548682 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||||||| | ||||| | ||| | |||||||||||||| | | || || | || Sbjct 548681 CAAACTTGGGT-GGCTGAACCCCACTTGTCCCTCTAAGAAGTTGGACGCCGAC--TGCTC 548625 Query 135 GATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| | || |||||| | | || || ||| ||||||||||||||||||| Sbjct 548624 -AGGGGTCACATAACTAGTTAGCATGCCAGAGTTTCATTCATTATCGGAATTAACCAGAC 548566 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||||||||| |||||||| ||||| ||||||||||| |||||| |||||||||| Sbjct 548565 AAATTGCTCCACCAAATAAGAACGTCCATGAACCACCACCCACAGAATCGAGAAAGAGCT 548506 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 548505 ATCAATCTGTC 548495 >seq37 Length=5027272 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||||||||||||||| |||||||||||| |||||||| Sbjct 3048803 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTGACCAGACAAATCGCTCCACCA 3048744 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 3048743 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 3048687 >seq242 Length=2598833 Score = 165 bits (182), Expect = 1e-38 Identities = 163/206 (79%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || ||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 1437205 GTCAGTGTAGTGCACGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1437147 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT--AG 132 ||| || | |||||| | |||| | | |||||||||||| | | |||||| || Sbjct 1437146 CAATCT-CGGGTGGCTGAATGCCACTTGGCCCTCTAAGAAGTTGGACTCCAACCGCTCAG 1437088 Query 133 TCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | ||| |||||| | | |||||||||||||| ||||||||||||||||| Sbjct 1437087 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATGGGAATTAACCAGACAAA 1437028 Query 191 TCACTCCACCAACTAAGAACGGCCAT 216 | |||||||||||||||| |||||| Sbjct 1437027 TTGCTCCACCAACTAAGAATGGCCAT 1437002 >seq150 Length=3195722 Score = 154 bits (170), Expect = 2e-35 Identities = 102/113 (90%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||||||||| |||||||||||||||||| |||||||| Sbjct 2055160 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 2055219 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||||||||||||||| |||||| |||||||||||| |||| Sbjct 2055220 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATAAATC 2055272 >seq423 Length=1807095 Score = 138 bits (152), Expect = 2e-30 Identities = 166/217 (76%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAATAGTCC 105 ||||||||||| ||| |||||||||| |||| | ||| ||| || | | || | |||| Sbjct 1443610 TAAGGGCATCATAGATCTGTTATTGC-TCAATC--CCAGGTGGATGAATGTCACTTGTCC 1443554 Query 106 CTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTA--AGG-TCT 162 |||||||||| || |||| | | |||| ||| | |||| || ||| Sbjct 1443553 CTCTAAGAAGTTGATTGCCGACCAC--TTG--GGGGTCGCTTAACTAGTTAGCAGACTCT 1443498 Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||||||| | |||||||||||| ||| | ||||| | |||||||||||||||| || Sbjct 1443497 CGTTCGTTGTTGGAATTAACCAGGCAACTTGCTCCA---AGTAAGAACGGCCATGCAGCA 1443441 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259 ||||||| ||||||||||||||||||||||||||||| Sbjct 1443440 CCACCCACAGAATCAAGAAAGAGCTATCAATCTGTCC 1443404 >seq467 Length=1696388 Score = 132 bits (146), Expect = 8e-29 Identities = 100/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| |||| |||| ||||||||||||||| | |||||||| Sbjct 1036838 CTAGTTAGCATGCCAGAGTCTTGTTCATTATTGGAATTAACCAGACA--TTGCTCCACCA 1036781 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 1036780 ACTAAGAATGGCCATGCACCACCACCCACAGAATCAAGAAAAAACTATCAATCTGTC 1036724 >seq313 Length=2271707 Score = 132 bits (146), Expect = 8e-29 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| Sbjct 1667024 GTCTCATTCATTATCAGAATTAACCAGACAAATTGCTCCACCAACTAAGAATGGCCATGC 1666965 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||| ||||||||||||| ||||||| Sbjct 1666964 ACCACCACCCACAGAATTGAGAAAGAGCTATC-ATCTGTC 1666926 >seq335 Length=2166203 Score = 102 bits (112), Expect = 1e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 |||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 937391 GTTAGAGTCTCATTCGTTATCAGAATTAACCAGACAAATCACTTCACCAACTAAGAACGG 937332 Query 213 CCATGCACC 221 ||||||||| Sbjct 937331 CCATGCACC 937323 >seq29 Length=5344911 Score = 86.0 bits (94), Expect = 1e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 4436022 TCAGTGTAGCGTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 4435966 >seq62 Length=4398749 Score = 84.2 bits (92), Expect = 3e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| ||||| | |||||||| |||||||||| ||||||||| |||||||||||| Sbjct 1377810 GTCTTGTTAATTATCAGCATTAACCACACAAATCACTTCACCAACTATGAACGGCCATGC 1377869 Query 219 ACCACCACC 227 ||| ||||| Sbjct 1377870 ACCCCCACC 1377878 >seq243 Length=2594140 Score = 73.4 bits (80), Expect = 6e-11 Identities = 61/72 (85%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGT 103 || ||||||||||||||||||||||||| ||||| | || |||||| | |||| | || Sbjct 1129976 ATATAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCGGGTGGCTGAACGCCACTTGT 1130033 Query 104 CCCTCTAAGAAG 115 |||||||||||| Sbjct 1130034 CCCTCTAAGAAG 1130045 >seq55 Length=4494983 Score = 73.4 bits (80), Expect = 6e-11 Identities = 55/62 (89%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| || ||||| | |||||||||||||||||||||||||||||||||| ||||||| Sbjct 2456898 TCTCTTT-GTTAT-GACATTAACCAGACAAATCACTCCACCAACTAAGAACAGCCATGCT 2456841 Query 220 CC 221 || Sbjct 2456840 CC 2456839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796728082077