Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2821 199 8e-49 seq2665 188 1e-45 seq3032 187 5e-45 >seq2821 Length=3560 Score = 199 bits (220), Expect = 8e-49 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||| | Sbjct 2572 GGACAGTGTATGGTGGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 2631 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | ||||| || ||||| | |||| ||| ||||||||||| | | Sbjct 2632 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGCAGAGTATAAAGGCAAAAGCGCGC 2691 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || || ||| |||||| |||||||| || |||| |||||||| ||| Sbjct 2692 TTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 2751 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 2752 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 2799 >seq2665 Length=5473 Score = 188 bits (208), Expect = 1e-45 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 4484 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGAGGA 4543 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| ||| || | || ||| | | ||| | ||||||| |||| ||| ||| Sbjct 4544 GTTCGAAGGTACGCTAGGTACGGTCGGACATCGTGCTAATAGTGCAATGGCATAAGCGTG 4603 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||||||| || |||||| |||||| |||||||| || | || |||||||| ||| Sbjct 4604 CTTAACTGCGAGACTGACAAGTCGAGCAGGTACGAAAGTAGGACATAGTGATCCGGTGGT 4663 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 4664 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 4712 >seq3032 Length=2309 Score = 187 bits (206), Expect = 5e-45 Identities = 181/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 107 TGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGG 166 || |||||| || | |||| ||||||||||||||||||||||||||||||||||||| Sbjct 1672 TGCCGGGACCCTGCATGGCGGGGAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGG 1731 Query 167 AGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 |||||| | ||| | ||||| || ||||| | || ||||||| |||| ||| Sbjct 1732 AGGCGCGCGAAGGTTGGCTCAGAGCGGTCGGAAATCGCTCGACGAGTGCAATGGCATAAG 1791 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 | ||||||||| ||| |||||| ||||| |||||||||||| | || |||||||| Sbjct 1792 CCAGCCTGACTGCGAGACCGACAAGTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGG 1851 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | | ||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 1852 TGGTCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 1904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982308469792