Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq3032 149 7e-34
seq2821 138 1e-30
seq2665 118 1e-24
>seq3032
Length=2309
Score = 149 bits (164), Expect = 7e-34
Identities = 121/151 (80%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| | |||||||| || |||||||||| || | | ||||||| |||
Sbjct 1516 CGGGGTCTTTCCGTCTGACCGCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCGCTG 1457
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|| | | | ||||||| ||| ||||||||||||||||||||||||||
Sbjct 1456 AGTTGGTGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1397
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 1396 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1366
>seq2821
Length=3560
Score = 138 bits (152), Expect = 1e-30
Identities = 121/152 (80%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| ||||| || | |||||||||| | | | |||||||||||
Sbjct 2416 CGGGGTCTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTG 2357
Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141
|| || ||| || |||||| ||| |||||||||||||||||||||||||
Sbjct 2356 AG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 2298
Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||||
Sbjct 2297 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 2266
>seq2665
Length=5473
Score = 118 bits (130), Expect = 1e-24
Identities = 116/151 (77%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| |||||||| ||||| |||| | | | ||| ||| ||||
Sbjct 4328 GGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGA 4269
Query 84 GCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || ||| | |||||| ||| ||||||||||||||||||||||||||
Sbjct 4268 G-TCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 4210
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 4209 GACAAGGAATTTCGCTACCTTAGGACCGTTA 4179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547150610583
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |