Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2821 360 7e-97 seq2665 297 7e-78 seq3032 181 4e-43 >seq2821 Length=3560 Score = 360 bits (398), Expect = 7e-97 Identities = 416/550 (76%), Gaps = 19/550 (3%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTG--TGGGCCCCCTAGACCA 102 |||||| || |||||||||||| | || |||||| | || |||||||| | | Sbjct 1280 CACTTCTGGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCCTAGCCGA 1221 Query 103 TCCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGA 161 |||||||||||| || || || ||| | | |||| |||||||| ||||| ||| Sbjct 1220 AACAGTGCTCTACCCCCCAGAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGA 1163 Query 162 GAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAG 221 |||||||||||| | || |||||| ||||||||| || ||||||| |||||||||| Sbjct 1162 GAACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAAGTCATCCCCTGCC 1103 Query 222 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCAT 281 |||||||| ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 1102 TTTTCAACGGAAGTGGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCTCAT 1043 Query 282 GGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGC 341 ||||||||| | | ||||||||| | || ||| | |||||||||| ||||||| Sbjct 1042 GGATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGC 984 Query 342 TTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401 |||||||||| || ||| | | |||||| ||||| || || || |||| | | || Sbjct 983 TTTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCA 926 Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461 || | ||||||| |||| ||||||| || |||| | ||||| || | |||| Sbjct 925 TTATACAAAAGGTACGCAGTCACCT--AAC---AAAG-----TAGGCTCCCACTGCTTGT 876 Query 462 AGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCT 520 | ||| | |||||||||| |||||||||||||| | | ||||| |||||| ||||||||| Sbjct 875 ACGCATACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 816 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 ||||||||| || | |||||||||| |||||||||||| ||| || ||||||| || Sbjct 815 CACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCC 756 Query 581 AGATTCACAC 590 | ||||| || Sbjct 755 ATATTCAGAC 746 >seq2665 Length=5473 Score = 297 bits (328), Expect = 7e-78 Identities = 422/585 (72%), Gaps = 43/585 (7%) Strand=Plus/Minus Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97 |||| |||| ||| |||||||||||| || ||| |||||| | | | ||||||| Sbjct 3216 GCTCGCACTCATCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTA 3158 Query 98 GACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTT 155 | |||| |||||||||||| ||| | || || | | | || |||||||| ||| Sbjct 3157 G-CCATAACAGTGCTCTACCCCCGATGGTGATACTTGAGGCACT--ACCTAAATAGTTTT 3101 Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCC 215 ||| ||||||||||||| | ||||||| || |||||||||||||| |||||| |||||| Sbjct 3100 CGGAGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTACCCACAGCTCATCC 3041 Query 216 CCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275 ||| | |||||||| | ||||||||||| |||||| | |||| ||||| ||| Sbjct 3040 CCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCT 2981 Query 276 GCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGG 335 | ||||| |||||||||| | ||||||||| | | || ||| | |||||||||||| Sbjct 2980 GGCCATGAGTAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGAATCGCCCTATTCGG 2921 Query 336 ACTCGCTTTCGCTACG---------------GCTA------CCCCACACGGGTTAACCTC 374 |||||||||||||||| |||| ||| | || |||||| || Sbjct 2920 ACTCGCTTTCGCTACGCCTTGACTCGCTTTCGCTACGCCTTCCCTATAC-GGTTAAGCTT 2862 Query 375 GCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTA 434 || || || | || |||| | | |||| | ||||||| |||| |||||| ||| Sbjct 2861 GCCACTGAATG-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-----CCT- 2809 Query 435 AAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCC 494 || ||||| || | ||||| ||||| ||||||||| |||||||||||||| Sbjct 2808 ---TGC---GAGGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCC 2755 Query 495 GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGT 554 | ||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct 2754 TTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGTCGAGT 2695 Query 555 ATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| ||| || ||||||| ||| |||| || |||||| Sbjct 2694 ATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTTCA 2650 >seq3032 Length=2309 Score = 181 bits (200), Expect = 4e-43 Identities = 200/265 (75%), Gaps = 1/265 (0%) Strand=Plus/Minus Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 ||||| |||||||||||||| | |||| ||||||||||||||||| |||||||||| Sbjct 264 TTTCGCGGAGAACCAGCTATTTCCTGCTTTGCTTGGCCTTTCACCCCTAGCCACAGGTCA 205 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAA 272 || || |||||||| ||| ||||||||||||| || ||||| |||||| Sbjct 204 TCTCCGACTTTTTCAACAGGCGTGAGTTCGGTCCTCCAGTGCGTGTTACCGCACCTTCAA 145 Query 273 CCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATT 332 ||||||||||| ||||||| | ||||||||| || | ||| ||| | |||||| || Sbjct 144 CCTGCCCATGGCTAGATCATCAGGTTTCGGGTCTAGAGCATGCAACTGACGCGCCCTGTT 85 Query 333 CGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTC 392 | |||||||||||||| || || | || ||| |||| ||||| || || | || || Sbjct 84 CAGACTCGCTTTCGCTGCGCCTCCACCTACCGGCTTAAGCTCGCTGCA-TACTCTAAGTC 26 Query 393 GCAGGCTCATTCTTCAAAAGGCACG 417 || | | |||| | ||||||| ||| Sbjct 25 GCTGACCCATTATACAAAAGGTACG 1 Score = 102 bits (112), Expect = 3e-19 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 ||||| |||||||||||||| | |||| ||||||||||||||||| |||||||||| Sbjct 392 TTTCGCGGAGAACCAGCTATTTCCTGCTTTGCTTGGCCTTTCACCCCTAGCCACAGGTCA 333 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAA 272 || || |||||||| ||| ||||||||||||| || ||||| |||||| Sbjct 332 TCTCCGACTTTTTCAACAGGCGTGAGTTCGGTCCTCCAGTGCGTGTTACCGCACCTTCAA 273 Query 273 CCTGCC 278 |||||| Sbjct 272 CCTGCC 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817430654208