Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 360 7e-97
seq2665 297 7e-78
seq3032 181 4e-43
>seq2821
Length=3560
Score = 360 bits (398), Expect = 7e-97
Identities = 416/550 (76%), Gaps = 19/550 (3%)
Strand=Plus/Minus
Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTG--TGGGCCCCCTAGACCA 102
|||||| || |||||||||||| | || |||||| | || |||||||| | |
Sbjct 1280 CACTTCTGGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCCTAGCCGA 1221
Query 103 TCCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGA 161
|||||||||||| || || || ||| | | |||| |||||||| ||||| |||
Sbjct 1220 AACAGTGCTCTACCCCCCAGAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGA 1163
Query 162 GAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAG 221
|||||||||||| | || |||||| ||||||||| || ||||||| ||||||||||
Sbjct 1162 GAACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAAGTCATCCCCTGCC 1103
Query 222 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCAT 281
|||||||| ||||||||||||||||||| | || ||||| ||||||||||| |||
Sbjct 1102 TTTTCAACGGAAGTGGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCTCAT 1043
Query 282 GGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGC 341
||||||||| | | ||||||||| | || ||| | |||||||||| |||||||
Sbjct 1042 GGATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGC 984
Query 342 TTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401
|||||||||| || ||| | | |||||| ||||| || || || |||| | | ||
Sbjct 983 TTTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCA 926
Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461
|| | ||||||| |||| ||||||| || |||| | ||||| || | ||||
Sbjct 925 TTATACAAAAGGTACGCAGTCACCT--AAC---AAAG-----TAGGCTCCCACTGCTTGT 876
Query 462 AGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCT 520
| ||| | |||||||||| |||||||||||||| | | ||||| |||||| |||||||||
Sbjct 875 ACGCATACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 816
Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580
||||||||| || | |||||||||| |||||||||||| ||| || ||||||| ||
Sbjct 815 CACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCC 756
Query 581 AGATTCACAC 590
| ||||| ||
Sbjct 755 ATATTCAGAC 746
>seq2665
Length=5473
Score = 297 bits (328), Expect = 7e-78
Identities = 422/585 (72%), Gaps = 43/585 (7%)
Strand=Plus/Minus
Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97
|||| |||| ||| |||||||||||| || ||| |||||| | | | |||||||
Sbjct 3216 GCTCGCACTCATCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTA 3158
Query 98 GACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTT 155
| |||| |||||||||||| ||| | || || | | | || |||||||| |||
Sbjct 3157 G-CCATAACAGTGCTCTACCCCCGATGGTGATACTTGAGGCACT--ACCTAAATAGTTTT 3101
Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCC 215
||| ||||||||||||| | ||||||| || |||||||||||||| |||||| ||||||
Sbjct 3100 CGGAGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTACCCACAGCTCATCC 3041
Query 216 CCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275
||| | |||||||| | ||||||||||| |||||| | |||| ||||| |||
Sbjct 3040 CCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCT 2981
Query 276 GCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGG 335
| ||||| |||||||||| | ||||||||| | | || ||| | ||||||||||||
Sbjct 2980 GGCCATGAGTAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGAATCGCCCTATTCGG 2921
Query 336 ACTCGCTTTCGCTACG---------------GCTA------CCCCACACGGGTTAACCTC 374
|||||||||||||||| |||| ||| | || |||||| ||
Sbjct 2920 ACTCGCTTTCGCTACGCCTTGACTCGCTTTCGCTACGCCTTCCCTATAC-GGTTAAGCTT 2862
Query 375 GCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTA 434
|| || || | || |||| | | |||| | ||||||| |||| |||||| |||
Sbjct 2861 GCCACTGAATG-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-----CCT- 2809
Query 435 AAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCC 494
|| ||||| || | ||||| ||||| ||||||||| ||||||||||||||
Sbjct 2808 ---TGC---GAGGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCC 2755
Query 495 GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGT 554
| ||||| |||||| |||||||||||||||||| || | ||||||||| ||||
Sbjct 2754 TTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGTCGAGT 2695
Query 555 ATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||| ||| || ||||||| ||| |||| || ||||||
Sbjct 2694 ATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTTCA 2650
>seq3032
Length=2309
Score = 181 bits (200), Expect = 4e-43
Identities = 200/265 (75%), Gaps = 1/265 (0%)
Strand=Plus/Minus
Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212
||||| |||||||||||||| | |||| ||||||||||||||||| ||||||||||
Sbjct 264 TTTCGCGGAGAACCAGCTATTTCCTGCTTTGCTTGGCCTTTCACCCCTAGCCACAGGTCA 205
Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAA 272
|| || |||||||| ||| ||||||||||||| || ||||| ||||||
Sbjct 204 TCTCCGACTTTTTCAACAGGCGTGAGTTCGGTCCTCCAGTGCGTGTTACCGCACCTTCAA 145
Query 273 CCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATT 332
||||||||||| ||||||| | ||||||||| || | ||| ||| | |||||| ||
Sbjct 144 CCTGCCCATGGCTAGATCATCAGGTTTCGGGTCTAGAGCATGCAACTGACGCGCCCTGTT 85
Query 333 CGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTC 392
| |||||||||||||| || || | || ||| |||| ||||| || || | || ||
Sbjct 84 CAGACTCGCTTTCGCTGCGCCTCCACCTACCGGCTTAAGCTCGCTGCA-TACTCTAAGTC 26
Query 393 GCAGGCTCATTCTTCAAAAGGCACG 417
|| | | |||| | ||||||| |||
Sbjct 25 GCTGACCCATTATACAAAAGGTACG 1
Score = 102 bits (112), Expect = 3e-19
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212
||||| |||||||||||||| | |||| ||||||||||||||||| ||||||||||
Sbjct 392 TTTCGCGGAGAACCAGCTATTTCCTGCTTTGCTTGGCCTTTCACCCCTAGCCACAGGTCA 333
Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAA 272
|| || |||||||| ||| ||||||||||||| || ||||| ||||||
Sbjct 332 TCTCCGACTTTTTCAACAGGCGTGAGTTCGGTCCTCCAGTGCGTGTTACCGCACCTTCAA 273
Query 273 CCTGCC 278
||||||
Sbjct 272 CCTGCC 267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817430654208
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