Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 596 4e-168
seq2665 360 5e-97
seq3032 143 7e-32
>seq2821
Length=3560
Score = 596 bits (660), Expect = 4e-168
Identities = 390/418 (93%), Gaps = 9/418 (2%)
Strand=Plus/Minus
Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62
||||||||||| ||||| || || ||||| |||||| ||| |||||||||||||||| |
Sbjct 1127 TCCGATCCACAAGTCATCCC-CTGCCTTTT-CAACGGAAGTGGGTTCGGTCCTCCAGTCA 1070
Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122
|| |||||| |||||| |||||||| ||| |||||||||||||||||| ||||||||||
Sbjct 1069 GT-GTTACCTAACCTT-CAACCTGCTCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 1015
Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1014 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 956
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCTAACA 897
Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 896 AAGTAGGCTCCCACTGCTTGTACGCATACGGTTTCAGGTTCTATTTCACTCCCCTCTCCG 837
Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 836 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTA 777
Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 776 GCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGTCCTACTCG 719
>seq2665
Length=5473
Score = 360 bits (398), Expect = 5e-97
Identities = 344/431 (80%), Gaps = 32/431 (7%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
|||||| |||| || |||| ||||||||| |||| ||||||| |||||||| | |||
Sbjct 3053 CCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGACCTCCAGTACCT-GTT 2997
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|| ||||| || |||| |||| | |||||| | ||||| |||||||| ||||||
Sbjct 2996 ACGGCACCTT-CATCCTGGCCATGAG-TAGATCACTTGGTTT-CGGGTCTACA-CCCAGC 2941
Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTT--------------------TCGCTACGCCT 167
|||| | ||||||| | |||||||||| |||||||||||
Sbjct 2940 GACTGAATCGCCCTATTCGGACTCGCTTTCGCTACGCCTTGACTCGCTTTCGCTACGCCT 2881
Query 168 CCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTA 227
|||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2880 TCCCTATACGGTTAAGCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTA 2822
Query 228 CGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATT 287
||||||||||| | |||||| |||| ||||| ||| ||||||||||||||||||
Sbjct 2821 CGCAGTCACCC--CTTGCGAGGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATT 2764
Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2763 TCACTCCCCT-TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTC 2705
Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGC 407
| ||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 2704 GATGTCGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTTCACGTGT 2645
Query 408 TCCGTCCTACT 418
||| ||||||
Sbjct 2644 CCCGCCCTACT 2634
>seq3032
Length=2309
Score = 143 bits (158), Expect = 7e-32
Identities = 176/227 (78%), Gaps = 19/227 (8%)
Strand=Plus/Minus
Query 9 CCACAGGTCAT-TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGT 67
||||||||||| |||| ||||||||||| | || ||||||||||||||| || ||
Sbjct 214 CCACAGGTCATCTCCG---ACTTTTTCAACAGGCGTGAGTTCGGTCCTCCAGTGCGT-GT 159
Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127
|||| ||||| |||||||||||| || |||||| | ||||| |||||||| | |
Sbjct 158 TACCGCACCTT-CAACCTGCCCAT-GGCTAGATCATCAGGTTT-CGGGTCTAGAGCAT-G 103
Query 128 CGACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCT 185
| ||| | |||||| | ||||||||||| |||| ||||||| |||| | |||||||
Sbjct 102 CAACTGACGCGCCCTGTTCAGACTCGCTTT-CGCTGCGCCTCCACCTACCGGCTTAAGCT 44
Query 186 TTGCCACTGAAAA---TAAGTCGCTGACCCATTATACAAAAGGTACG 229
| ||| | | |||||||||||||||||||||||||||||||
Sbjct 43 ----CGCTGCATACTCTAAGTCGCTGACCCATTATACAAAAGGTACG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241484320128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |