Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2821 596 4e-168 seq2665 360 5e-97 seq3032 143 7e-32 >seq2821 Length=3560 Score = 596 bits (660), Expect = 4e-168 Identities = 390/418 (93%), Gaps = 9/418 (2%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||| ||||| || || ||||| |||||| ||| |||||||||||||||| | Sbjct 1127 TCCGATCCACAAGTCATCCC-CTGCCTTTT-CAACGGAAGTGGGTTCGGTCCTCCAGTCA 1070 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || |||||| |||||| |||||||| ||| |||||||||||||||||| |||||||||| Sbjct 1069 GT-GTTACCTAACCTT-CAACCTGCTCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 1015 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1014 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 956 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 955 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCTAACA 897 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 896 AAGTAGGCTCCCACTGCTTGTACGCATACGGTTTCAGGTTCTATTTCACTCCCCTCTCCG 837 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 836 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTA 777 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 776 GCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGTCCTACTCG 719 >seq2665 Length=5473 Score = 360 bits (398), Expect = 5e-97 Identities = 344/431 (80%), Gaps = 32/431 (7%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || |||| ||||||||| |||| ||||||| |||||||| | ||| Sbjct 3053 CCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGACCTCCAGTACCT-GTT 2997 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || ||||| || |||| |||| | |||||| | ||||| |||||||| |||||| Sbjct 2996 ACGGCACCTT-CATCCTGGCCATGAG-TAGATCACTTGGTTT-CGGGTCTACA-CCCAGC 2941 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTT--------------------TCGCTACGCCT 167 |||| | ||||||| | |||||||||| ||||||||||| Sbjct 2940 GACTGAATCGCCCTATTCGGACTCGCTTTCGCTACGCCTTGACTCGCTTTCGCTACGCCT 2881 Query 168 CCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTA 227 |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 2880 TCCCTATACGGTTAAGCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTA 2822 Query 228 CGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATT 287 ||||||||||| | |||||| |||| ||||| ||| |||||||||||||||||| Sbjct 2821 CGCAGTCACCC--CTTGCGAGGCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATT 2764 Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2763 TCACTCCCCT-TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTC 2705 Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGC 407 | ||||||||||||||||||||||||||||||| |||||||| |||| |||| Sbjct 2704 GATGTCGAGTATTTAGCCTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTTCACGTGT 2645 Query 408 TCCGTCCTACT 418 ||| |||||| Sbjct 2644 CCCGCCCTACT 2634 >seq3032 Length=2309 Score = 143 bits (158), Expect = 7e-32 Identities = 176/227 (78%), Gaps = 19/227 (8%) Strand=Plus/Minus Query 9 CCACAGGTCAT-TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGT 67 ||||||||||| |||| ||||||||||| | || ||||||||||||||| || || Sbjct 214 CCACAGGTCATCTCCG---ACTTTTTCAACAGGCGTGAGTTCGGTCCTCCAGTGCGT-GT 159 Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 |||| ||||| |||||||||||| || |||||| | ||||| |||||||| | | Sbjct 158 TACCGCACCTT-CAACCTGCCCAT-GGCTAGATCATCAGGTTT-CGGGTCTAGAGCAT-G 103 Query 128 CGACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCT 185 | ||| | |||||| | ||||||||||| |||| ||||||| |||| | ||||||| Sbjct 102 CAACTGACGCGCCCTGTTCAGACTCGCTTT-CGCTGCGCCTCCACCTACCGGCTTAAGCT 44 Query 186 TTGCCACTGAAAA---TAAGTCGCTGACCCATTATACAAAAGGTACG 229 | ||| | | ||||||||||||||||||||||||||||||| Sbjct 43 ----CGCTGCATACTCTAAGTCGCTGACCCATTATACAAAAGGTACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241484320128