Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq554 114 2e-23
seq686 109 7e-22
seq685 93.3 5e-17
seq707 91.5 2e-16
seq367 91.5 2e-16
seq156 84.2 3e-14
>seq554
Length=1445144
Score = 114 bits (126), Expect = 2e-23
Identities = 146/192 (76%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||||
Sbjct 593375 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 593433
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
||||||||||||||||||||||||| |||| ||||| | || || | | ||||
Sbjct 593434 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 593493
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183
|| | ||| |||| | ||| | |||||||| | |||||||| | || ||| ||||||
Sbjct 593494 TCAGTTAAGAGCATCAAGGGAGCGCCAAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 593553
Query 184 GTGAGGCGGACC 195
| ||||||||
Sbjct 593554 TCGCGGCGGACC 593565
>seq686
Length=1154353
Score = 109 bits (120), Expect = 7e-22
Identities = 145/192 (76%), Gaps = 7/192 (4%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||||
Sbjct 101610 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 101552
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
||||||||||||||||||||||||| |||| ||||| | || || | | ||||
Sbjct 101551 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 101492
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183
|| | ||| |||| | ||| | || ||||| | |||||||| | || ||| ||||||
Sbjct 101491 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 101432
Query 184 GTGAGGCGGACC 195
| ||||||||
Sbjct 101431 TCGCGGCGGACC 101420
>seq685
Length=1154951
Score = 93.3 bits (102), Expect = 5e-17
Identities = 144/194 (74%), Gaps = 9/194 (5%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| ||| | ||||||||| |||||| | ||| |||||| ||
Sbjct 548104 AAACCAACAAAATAGAAACGGA-GTCCTATTCCATTATTGCTAGCTGGAGTATTCCAGCA 548046
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA-AGTCCTGGTTCCTCCGCACA 127
||||||||||||||| |||||||| |||| ||||| | | | | ||| | | |||
Sbjct 548045 ACCAGCCTGCTTTGAACATGCTAATTTTTTCAAAGTAAACACTTC-AGATCCCCAGGACA 547987
Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182
| || | ||| |||| | ||| | || ||||| | |||||||| | || ||| |||||
Sbjct 547986 CTCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAAGCGGTAGCTCGC 547927
Query 183 CGTGAGGCGGACCA 196
| || ||| |||||
Sbjct 547926 CTTGTGGCAGACCA 547913
>seq707
Length=1104143
Score = 91.5 bits (100), Expect = 2e-16
Identities = 83/102 (81%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| ||||||| ||| |||||| ||||
Sbjct 966442 AAACCAACAAAATAGAACCGGA-GTCCTATTCCGTTATTCCTAGCTGGAGTATTCTGGCG 966500
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
||||||||||||||||||||||||| |||| ||||| ||
Sbjct 966501 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGT 966542
>seq367
Length=2037526
Score = 91.5 bits (100), Expect = 2e-16
Identities = 80/97 (82%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||| ||| |||||| ||||
Sbjct 1627626 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 1627568
Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTA 105
||||||||||||||||||||||||| |||| |||
Sbjct 1627567 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTA 1627531
>seq156
Length=3147509
Score = 84.2 bits (92), Expect = 3e-14
Identities = 121/163 (74%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| | | ||||||||| |||||| ||| |||||| || |
Sbjct 2542499 AAACCAACAAAATAGAACTGGA-GTCCTATTCCGTTATTCGTAGCTGGAGTATTCCGGTG 2542557
Query 70 -TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128
| ||| ||||||||||||||||||||| |||| ||||| | || || | | ||||
Sbjct 2542558 ATCAGCTTGCTTTGAACACTCTAATTTTTTCAAAGTAAATGCTTCGGACCCCCAGGACAC 2542617
Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGG 167
|| | ||| |||| | ||| |||| ||||| | ||||||||
Sbjct 2542618 TCAGTTAAGAGCATCAAGGGAGCACCGAGAGGCAGGGGCTGGG 2542660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595146278178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |