Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq554 114 2e-23 seq686 109 7e-22 seq685 93.3 5e-17 seq707 91.5 2e-16 seq367 91.5 2e-16 seq156 84.2 3e-14 >seq554 Length=1445144 Score = 114 bits (126), Expect = 2e-23 Identities = 146/192 (76%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 593375 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 593433 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 593434 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 593493 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | |||||||| | |||||||| | || ||| |||||| Sbjct 593494 TCAGTTAAGAGCATCAAGGGAGCGCCAAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 593553 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 593554 TCGCGGCGGACC 593565 >seq686 Length=1154353 Score = 109 bits (120), Expect = 7e-22 Identities = 145/192 (76%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 101610 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 101552 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 ||||||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 101551 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCCAGGACAC 101492 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCC 183 || | ||| |||| | ||| | || ||||| | |||||||| | || ||| |||||| Sbjct 101491 TCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCC 101432 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 101431 TCGCGGCGGACC 101420 >seq685 Length=1154951 Score = 93.3 bits (102), Expect = 5e-17 Identities = 144/194 (74%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| | ||||||||| |||||| | ||| |||||| || Sbjct 548104 AAACCAACAAAATAGAAACGGA-GTCCTATTCCATTATTGCTAGCTGGAGTATTCCAGCA 548046 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA-AGTCCTGGTTCCTCCGCACA 127 ||||||||||||||| |||||||| |||| ||||| | | | | ||| | | ||| Sbjct 548045 ACCAGCCTGCTTTGAACATGCTAATTTTTTCAAAGTAAACACTTC-AGATCCCCAGGACA 547987 Query 128 C-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| | ||| | || ||||| | |||||||| | || ||| ||||| Sbjct 547986 CTCAGTTAAGAGCATCAAGGGAGCGCCGAGAGGCAGGGGCTGGGACAAGCGGTAGCTCGC 547927 Query 183 CGTGAGGCGGACCA 196 | || ||| ||||| Sbjct 547926 CTTGTGGCAGACCA 547913 >seq707 Length=1104143 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| ||||||| ||| |||||| |||| Sbjct 966442 AAACCAACAAAATAGAACCGGA-GTCCTATTCCGTTATTCCTAGCTGGAGTATTCTGGCG 966500 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||||||||||||||||||||||||| |||| ||||| || Sbjct 966501 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGT 966542 >seq367 Length=2037526 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 1627626 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGAGTATTCCGGCG 1627568 Query 70 TA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTA 105 ||||||||||||||||||||||||| |||| ||| Sbjct 1627567 ACCAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTA 1627531 >seq156 Length=3147509 Score = 84.2 bits (92), Expect = 3e-14 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | | ||||||||| |||||| ||| |||||| || | Sbjct 2542499 AAACCAACAAAATAGAACTGGA-GTCCTATTCCGTTATTCGTAGCTGGAGTATTCCGGTG 2542557 Query 70 -TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 | ||| ||||||||||||||||||||| |||| ||||| | || || | | |||| Sbjct 2542558 ATCAGCTTGCTTTGAACACTCTAATTTTTTCAAAGTAAATGCTTCGGACCCCCAGGACAC 2542617 Query 129 -CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGG 167 || | ||| |||| | ||| |||| ||||| | |||||||| Sbjct 2542618 TCAGTTAAGAGCATCAAGGGAGCACCGAGAGGCAGGGGCTGGG 2542660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595146278178