Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 197 3e-48
seq2665 179 9e-43
seq3032 80.6 6e-13
>seq2821
Length=3560
Score = 197 bits (218), Expect = 3e-48
Identities = 292/404 (72%), Gaps = 11/404 (3%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| || ||||||||||||| ||||||||||| | | || ||| | |
Sbjct 1726 CGACTACGCCTTTCAGCCTCGCCTTAGGGACCGACTCACCCTGCGTCGATTAACGTTGCG 1667
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA--CGCTACTCATGCC 118
| ||||||||||| |||||| || | || ||| || || || |||||||| |
Sbjct 1666 CAGGAACCCTTGGTCTTTCGGCGTGCGAGTTTTTCACTCG-CATTGTCGTTACTCATGTC 1608
Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176
|||||| |||| | || | ||||| || | || | || |||||| || |||
Sbjct 1607 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 1550
Query 177 CGACGCTCCCCTACCCAACCAC-ACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGC 232
||||||| ||||| | ||| | |||| || |||||||| | | || |||
Sbjct 1549 GAACGCTCCTCTACCGCATCACCAGAGGTGATACCCGTAGCTTCGGTGCCTGGTTTGAGC 1490
Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292
|||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||||
Sbjct 1489 CCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 1430
Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
|||||||||| ||||||||||||| | |||||| || ||||||| ||| ||||| |
Sbjct 1429 GTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTACCACTTA 1370
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|| |||| ||| |||||||||| | |||||| |||||||||
Sbjct 1369 ACCAGGACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 1326
>seq2665
Length=5473
Score = 179 bits (198), Expect = 9e-43
Identities = 291/405 (72%), Gaps = 18/405 (4%)
Strand=Plus/Minus
Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62
|||||| | || ||||||||||||| ||||||||||| | | || ||| |||| |
Sbjct 3650 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 3591
Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121
| |||| | || | | ||||| |||| || |||||| | ||||||||||| | ||
Sbjct 3590 GAAACCTTGGGCTTA-CGGCGTGCGGGCTTTTCACCCGCATTATCGCTACTCATGTCAGC 3532
Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179
|||| |||| | || | ||||| || | | || | || |||| | || ||| |
Sbjct 3531 ATTCGCACTTCTGAT-ACCTCCAGCATCCTTT-ACAAGACACCTTCGCAGGCTTACAGAA 3474
Query 180 CGCTCCCCTACCCAACCACA------CAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
||||| |||||| | | || ||| | || ||||||||| | | |||| |||
Sbjct 3473 CGCTCTCCTACC-ATCTGCATTACTGCAGAT--CCGCAGCTTCGGTGACTGGCTTA-GCC 3418
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| ||||| || |||| | | ||| || |||||||||||||||| ||||| |||||
Sbjct 3417 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGA 3358
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353
|||||||||| |||||||||||||| ||| | || |||| || ||| ||||| ||
Sbjct 3357 TGGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAG 3298
Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
|| ||| ||| ||||||||| | |||||| |||||||||||
Sbjct 3297 CCA-ATCTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 3254
>seq3032
Length=2309
Score = 80.6 bits (88), Expect = 6e-13
Identities = 99/134 (74%), Gaps = 1/134 (1%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| ||| ||||||| | || || ||| |
Sbjct 940 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTCACCCTGCGCGGATTAACCGTGCG 881
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119
| |||||||||||| ||||| | | ||| ||| | | ||||||||||| |
Sbjct 880 CAGGAACCCTTGGACTTCCGGCGAGAGTGTTTCTCACACTCTTTGTCGCTACTCATGTCA 821
Query 120 GCATTCTCACTCGC 133
||||||||||| ||
Sbjct 820 GCATTCTCACTTGC 807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177490283008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |