Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2821 197 3e-48 seq2665 179 9e-43 seq3032 80.6 6e-13 >seq2821 Length=3560 Score = 197 bits (218), Expect = 3e-48 Identities = 292/404 (72%), Gaps = 11/404 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| || ||||||||||||| ||||||||||| | | || ||| | | Sbjct 1726 CGACTACGCCTTTCAGCCTCGCCTTAGGGACCGACTCACCCTGCGTCGATTAACGTTGCG 1667 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA--CGCTACTCATGCC 118 | ||||||||||| |||||| || | || ||| || || || |||||||| | Sbjct 1666 CAGGAACCCTTGGTCTTTCGGCGTGCGAGTTTTTCACTCG-CATTGTCGTTACTCATGTC 1608 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 1607 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 1550 Query 177 CGACGCTCCCCTACCCAACCAC-ACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGC 232 ||||||| ||||| | ||| | |||| || |||||||| | | || ||| Sbjct 1549 GAACGCTCCTCTACCGCATCACCAGAGGTGATACCCGTAGCTTCGGTGCCTGGTTTGAGC 1490 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 1489 CCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 1430 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| ||||||||||||| | |||||| || ||||||| ||| ||||| | Sbjct 1429 GTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTACCACTTA 1370 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 1369 ACCAGGACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 1326 >seq2665 Length=5473 Score = 179 bits (198), Expect = 9e-43 Identities = 291/405 (72%), Gaps = 18/405 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62 |||||| | || ||||||||||||| ||||||||||| | | || ||| |||| | Sbjct 3650 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 3591 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 | |||| | || | | ||||| |||| || |||||| | ||||||||||| | || Sbjct 3590 GAAACCTTGGGCTTA-CGGCGTGCGGGCTTTTCACCCGCATTATCGCTACTCATGTCAGC 3532 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || | | || | || |||| | || ||| | Sbjct 3531 ATTCGCACTTCTGAT-ACCTCCAGCATCCTTT-ACAAGACACCTTCGCAGGCTTACAGAA 3474 Query 180 CGCTCCCCTACCCAACCACA------CAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||| |||||| | | || ||| | || ||||||||| | | |||| ||| Sbjct 3473 CGCTCTCCTACC-ATCTGCATTACTGCAGAT--CCGCAGCTTCGGTGACTGGCTTA-GCC 3418 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| ||||| Sbjct 3417 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGA 3358 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| ||| | || |||| || ||| ||||| || Sbjct 3357 TGGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAG 3298 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || ||| ||| ||||||||| | |||||| ||||||||||| Sbjct 3297 CCA-ATCTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 3254 >seq3032 Length=2309 Score = 80.6 bits (88), Expect = 6e-13 Identities = 99/134 (74%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| ||||||| | || || ||| | Sbjct 940 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTCACCCTGCGCGGATTAACCGTGCG 881 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | |||||||||||| ||||| | | ||| ||| | | ||||||||||| | Sbjct 880 CAGGAACCCTTGGACTTCCGGCGAGAGTGTTTCTCACACTCTTTGTCGCTACTCATGTCA 821 Query 120 GCATTCTCACTCGC 133 ||||||||||| || Sbjct 820 GCATTCTCACTTGC 807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177490283008