Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 163 2e-38
seq2821 136 3e-30
seq3032 123 2e-26
>seq2665
Length=5473
Score = 163 bits (180), Expect = 2e-38
Identities = 120/140 (86%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||
Sbjct 4701 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 4642
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | |||| ||||||| | |||||| ||| ||||||||||||||
Sbjct 4641 CTTTCGTACCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 4582
Query 121 CACTACGATTTCCGACCGTA 140
| ||||| ||||||||||
Sbjct 4581 TAGCACGATGTCCGACCGTA 4562
>seq2821
Length=3560
Score = 136 bits (150), Expect = 3e-30
Identities = 113/138 (82%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 2788 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 2729
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | ||| ||||||| |||||| | |||||||| || ||| |
Sbjct 2728 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCT 2669
Query 121 CACTACGATTTCCGACCG 138
|||||||||||||
Sbjct 2668 GCGACCGATTTCCGACCG 2651
>seq3032
Length=2309
Score = 123 bits (136), Expect = 2e-26
Identities = 110/138 (80%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 1893 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 1834
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | |||| | ||||||| ||| || ||| ||||||||||||
Sbjct 1833 CTTTCGTCTCTGCTCGACTTGTCGGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCG 1774
Query 121 CACTACGATTTCCGACCG 138
|||||||||||||
Sbjct 1773 TCGAGCGATTTCCGACCG 1756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351969253900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |