Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq2665 163 2e-38 seq2821 136 3e-30 seq3032 123 2e-26 >seq2665 Length=5473 Score = 163 bits (180), Expect = 2e-38 Identities = 120/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 4701 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 4642 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 4641 CTTTCGTACCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 4582 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 4581 TAGCACGATGTCCGACCGTA 4562 >seq2821 Length=3560 Score = 136 bits (150), Expect = 3e-30 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 2788 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 2729 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | ||| ||||||| |||||| | |||||||| || ||| | Sbjct 2728 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCT 2669 Query 121 CACTACGATTTCCGACCG 138 ||||||||||||| Sbjct 2668 GCGACCGATTTCCGACCG 2651 >seq3032 Length=2309 Score = 123 bits (136), Expect = 2e-26 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 1893 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 1834 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| | ||||||| ||| || ||| |||||||||||| Sbjct 1833 CTTTCGTCTCTGCTCGACTTGTCGGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCG 1774 Query 121 CACTACGATTTCCGACCG 138 ||||||||||||| Sbjct 1773 TCGAGCGATTTCCGACCG 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351969253900