Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq554 105 7e-21
seq707 102 8e-20
seq686 100 3e-19
seq367 91.5 2e-16
seq685 86.0 6e-15
seq165 77.0 3e-12
seq156 75.2 1e-11
>seq554
Length=1445144
Score = 105 bits (116), Expect = 7e-21
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 593472 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 593413
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 593412 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 593355
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 593354 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 593301
>seq707
Length=1104143
Score = 102 bits (112), Expect = 8e-20
Identities = 131/177 (74%), Gaps = 3/177 (2%)
Strand=Plus/Minus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68
|| ||||||||||||||||||||| ||||||||||||| | || |||||| | |
Sbjct 966542 ACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCAGAATACTCCAGCT 966483
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||
Sbjct 966482 AGGAATAACGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATG 966425
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| || | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 966424 ATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 966368
>seq686
Length=1154353
Score = 100 bits (110), Expect = 3e-19
Identities = 129/174 (74%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||||| ||||||||||||| | || |||||| | | ||
Sbjct 101513 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 101572
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||||| ||||||||| | |||||||||||||| ||||| | ||| | | |||||
Sbjct 101573 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 101630
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
|| ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 101631 AAGGGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 101684
>seq367
Length=2037526
Score = 91.5 bits (100), Expect = 2e-16
Identities = 80/97 (82%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGGAA 73
||||||||||||||||||| ||||||||||||| | || |||||| | | ||||
Sbjct 1627531 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAA 1627590
Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||| ||||||||| | |||||||||||||| |||||
Sbjct 1627591 TAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT 1627626
>seq685
Length=1154951
Score = 86.0 bits (94), Expect = 6e-15
Identities = 80/99 (81%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71
||||||||||||||||||| ||||||||||||| ||||| |||||| | | |
Sbjct 548007 TTTACTTTGAAAAAATTAGCATGTTCAAAGCAGGCTGGTTGCTGGAATACTCCAGCTAGC 548066
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||| ||||||||| | || ||||||||||| |||||
Sbjct 548067 AATAATGGAATAGGAC-TCCGTTTCTATTTTGTTGGTTT 548104
>seq165
Length=3102812
Score = 77.0 bits (84), Expect = 3e-12
Identities = 127/176 (72%), Gaps = 8/176 (5%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAA-TTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCAT 69
||||||||||||||| |||||| |||||||||| |||| |||| |||||| | |
Sbjct 1783705 TTTACTTTGAAAAAAATTAGAGTGTTCAAAGCA-GCCTGGTTGCCAGAATACTCCAGCTA 1783647
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
||||||| |||| ||| |||||||||||||| ||||| | ||| | | |||
Sbjct 1783646 AGAATAAT-TAATAAGAC--TCGGTTCTATTTTGTTGGTTT-TTGGAACTGGGGCCATGG 1783591
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
| || | |||| | ||||| | ||||| || | |||| |||||||||||
Sbjct 1783590 TTAAGAGGGATGGCTGGGGGCATTCGTATTGTGCTGCTAGAGGTTAAATTCTTGGA 1783535
>seq156
Length=3147509
Score = 75.2 bits (82), Expect = 1e-11
Identities = 79/102 (77%), Gaps = 8/102 (8%)
Strand=Plus/Minus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68
||||||||||||||||||||| |||||||||| || || || |||||| | |
Sbjct 2542596 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC---TGATCACCGGAATACTCCAGCT 2542540
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110
|||||| ||||||||| | | |||||||||||| |||||
Sbjct 2542539 ACGAATAACGGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT 2542499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511953787680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |