Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq554 105 7e-21 seq707 102 8e-20 seq686 100 3e-19 seq367 91.5 2e-16 seq685 86.0 6e-15 seq165 77.0 3e-12 seq156 75.2 1e-11 >seq554 Length=1445144 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 593472 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 593413 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 593412 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 593355 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 593354 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 593301 >seq707 Length=1104143 Score = 102 bits (112), Expect = 8e-20 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 || ||||||||||||||||||||| ||||||||||||| | || |||||| | | Sbjct 966542 ACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCAGAATACTCCAGCT 966483 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||| Sbjct 966482 AGGAATAACGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATG 966425 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 966424 ATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 966368 >seq686 Length=1154353 Score = 100 bits (110), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 101513 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 101572 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 101573 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 101630 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 101631 AAGGGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 101684 >seq367 Length=2037526 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGGAA 73 ||||||||||||||||||| ||||||||||||| | || |||||| | | |||| Sbjct 1627531 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAA 1627590 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||| ||||||||| | |||||||||||||| ||||| Sbjct 1627591 TAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT 1627626 >seq685 Length=1154951 Score = 86.0 bits (94), Expect = 6e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||| ||||||||||||| ||||| |||||| | | | Sbjct 548007 TTTACTTTGAAAAAATTAGCATGTTCAAAGCAGGCTGGTTGCTGGAATACTCCAGCTAGC 548066 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | || ||||||||||| ||||| Sbjct 548067 AATAATGGAATAGGAC-TCCGTTTCTATTTTGTTGGTTT 548104 >seq165 Length=3102812 Score = 77.0 bits (84), Expect = 3e-12 Identities = 127/176 (72%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAA-TTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCAT 69 ||||||||||||||| |||||| |||||||||| |||| |||| |||||| | | Sbjct 1783705 TTTACTTTGAAAAAAATTAGAGTGTTCAAAGCA-GCCTGGTTGCCAGAATACTCCAGCTA 1783647 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||| |||| ||| |||||||||||||| ||||| | ||| | | ||| Sbjct 1783646 AGAATAAT-TAATAAGAC--TCGGTTCTATTTTGTTGGTTT-TTGGAACTGGGGCCATGG 1783591 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | |||| | ||||| | ||||| || | |||| ||||||||||| Sbjct 1783590 TTAAGAGGGATGGCTGGGGGCATTCGTATTGTGCTGCTAGAGGTTAAATTCTTGGA 1783535 >seq156 Length=3147509 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/102 (77%), Gaps = 8/102 (8%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 ||||||||||||||||||||| |||||||||| || || || |||||| | | Sbjct 2542596 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGC---TGATCACCGGAATACTCCAGCT 2542540 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||| ||||||||| | | |||||||||||| ||||| Sbjct 2542539 ACGAATAACGGAATAGGAC-TCCAGTTCTATTTTGTTGGTTT 2542499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511953787680