Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq2665 183 3e-44 seq2821 150 2e-34 seq3032 132 5e-29 >seq2665 Length=5473 Score = 183 bits (202), Expect = 3e-44 Identities = 134/156 (86%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 4689 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 4630 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 4629 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCACGATGTC 4570 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 4569 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 4534 >seq2821 Length=3560 Score = 150 bits (166), Expect = 2e-34 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 2776 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 2717 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||| |||| || ||| | |||| || Sbjct 2716 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTGCGACCGATTTC 2657 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| |||||||| ||||||||||| Sbjct 2656 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 2621 >seq3032 Length=2309 Score = 132 bits (146), Expect = 5e-29 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | ||||||||||||||||| || |||||| ||| Sbjct 1881 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGACTTTCGTCTCTG 1822 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||||| || ||||||||||||||||| | |||| || Sbjct 1821 CTCGACTTGTCGGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCGTCGAGCGATTTC 1762 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||||||| || ||||||||| Sbjct 1761 CGACCGCTCTGAGCCAACCTTCGCGCGCCTCCGTTA 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473557253604