Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 183 3e-44
seq2821 150 2e-34
seq3032 132 5e-29
>seq2665
Length=5473
Score = 183 bits (202), Expect = 3e-44
Identities = 134/156 (86%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||
Sbjct 4689 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 4630
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 4629 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCACGATGTC 4570
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| |||| ||||||| |||||||||||
Sbjct 4569 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 4534
>seq2821
Length=3560
Score = 150 bits (166), Expect = 2e-34
Identities = 127/156 (81%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||
Sbjct 2776 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 2717
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| |||||||||||||| |||| |||| || ||| | |||| ||
Sbjct 2716 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTGCGACCGATTTC 2657
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| |||||||| |||||||||||
Sbjct 2656 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 2621
>seq3032
Length=2309
Score = 132 bits (146), Expect = 5e-29
Identities = 123/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | ||||||||||||||||| || |||||| |||
Sbjct 1881 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGACTTTCGTCTCTG 1822
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| ||||||||||| || ||||||||||||||||| | |||| ||
Sbjct 1821 CTCGACTTGTCGGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCGTCGAGCGATTTC 1762
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| ||||||| || |||||||||
Sbjct 1761 CGACCGCTCTGAGCCAACCTTCGCGCGCCTCCGTTA 1726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473557253604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |