Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2665 268 1e-69 seq2821 259 8e-67 seq3032 140 5e-31 >seq2665 Length=5473 Score = 268 bits (296), Expect = 1e-69 Identities = 223/273 (82%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| | | ||| |||||||||| |||||| ||||| ||||| ||||||||| ||| || Sbjct 5035 AGGCGAGTTTCCCGCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGC 4976 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 |||| |||| ||||| ||| ||||||||||| ||||| |||||||||||||||| Sbjct 4975 AATGCCACTGGCGTGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACT 4916 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | | |||| || ||||| |||| ||||||||| | |||||||||| ||||||||| || Sbjct 4915 AGGAGCAGCCCCCTTCAAACTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACG 4856 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||| | |||||||||| ||| || |||||| ||||||||||| |||||||||||| Sbjct 4855 ACGTTTTAAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCG 4796 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || |||||||||||| Sbjct 4795 GCTACAGCCCCAGGATGTGATGAGCCGACATCG 4763 >seq2821 Length=3560 Score = 259 bits (286), Expect = 8e-67 Identities = 215/262 (82%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| ||| ||||| ||| || |||| |||| Sbjct 3111 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACATAGCTACCCGGCAATGCCACTGGCG 3052 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||| ||| Sbjct 3051 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 2992 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||||| || ||| ||||| | |||||||||||||||||||| ||||||||| ||||| Sbjct 2991 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCC 2932 Query 196 A--GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 | ||||||| || |||||| || ||| ||||| |||||||||||| |||||||||| Sbjct 2931 AGCGCTCGCGCACCCCTTTAAAGGCCGACCAGCCATACCCTTGGGACCGGCTTCAGCCCC 2872 Query 254 AGGATGAGACGAGCCGACATCG 275 |||||| || |||||||||||| Sbjct 2871 AGGATGTGATGAGCCGACATCG 2850 >seq3032 Length=2309 Score = 140 bits (154), Expect = 5e-31 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||| ||| |||||||| ||| | Sbjct 2213 GAGGGGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGCACTTAGCTACCCGG 2154 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| ||| |||||||||| |||||||||||||||||||||| Sbjct 2153 CGATGCGGCTGGCGCCACAACCGGTACACCAGAGGTGCGTCCATCCCGGTCCTCTCGTAC 2094 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACG 156 || ||||||| ||||||| ||| || |||||| Sbjct 2093 TAGGGACAGCGCCTCTCACCACTCCGACACCCACG 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780729526212