Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 268 1e-69
seq2821 259 8e-67
seq3032 140 5e-31
>seq2665
Length=5473
Score = 268 bits (296), Expect = 1e-69
Identities = 223/273 (82%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62
||| | | ||| |||||||||| |||||| ||||| ||||| ||||||||| ||| ||
Sbjct 5035 AGGCGAGTTTCCCGCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGC 4976
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
|||| |||| ||||| ||| ||||||||||| ||||| ||||||||||||||||
Sbjct 4975 AATGCCACTGGCGTGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACT 4916
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| | |||| || ||||| |||| ||||||||| | |||||||||| ||||||||| ||
Sbjct 4915 AGGAGCAGCCCCCTTCAAACTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACG 4856
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
||||| | |||||||||| ||| || |||||| ||||||||||| ||||||||||||
Sbjct 4855 ACGTTTTAAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCG 4796
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| ||||||||||||| || ||||||||||||
Sbjct 4795 GCTACAGCCCCAGGATGTGATGAGCCGACATCG 4763
>seq2821
Length=3560
Score = 259 bits (286), Expect = 8e-67
Identities = 215/262 (82%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
|||||||||| |||||| ||||| ||||| ||| ||||| ||| || |||| ||||
Sbjct 3111 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACATAGCTACCCGGCAATGCCACTGGCG 3052
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
||||| || ||||||||||| ||||| ||||||||||||||||| | |||| |||
Sbjct 3051 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 2992
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||||||| || ||| ||||| | |||||||||||||||||||| ||||||||| |||||
Sbjct 2991 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCC 2932
Query 196 A--GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253
| ||||||| || |||||| || ||| ||||| |||||||||||| ||||||||||
Sbjct 2931 AGCGCTCGCGCACCCCTTTAAAGGCCGACCAGCCATACCCTTGGGACCGGCTTCAGCCCC 2872
Query 254 AGGATGAGACGAGCCGACATCG 275
|||||| || ||||||||||||
Sbjct 2871 AGGATGTGATGAGCCGACATCG 2850
>seq3032
Length=2309
Score = 140 bits (154), Expect = 5e-31
Identities = 124/155 (80%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| ||| ||| |||||||||| |||||| ||||||| ||| |||||||| ||| |
Sbjct 2213 GAGGGGGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGCACTTAGCTACCCGG 2154
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| |||| |||| ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 2153 CGATGCGGCTGGCGCCACAACCGGTACACCAGAGGTGCGTCCATCCCGGTCCTCTCGTAC 2094
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACG 156
|| ||||||| ||||||| ||| || ||||||
Sbjct 2093 TAGGGACAGCGCCTCTCACCACTCCGACACCCACG 2059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780729526212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |