Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 338 2e-90
>seq2665
Length=5473
Score = 338 bits (374), Expect = 2e-90
Identities = 327/414 (79%), Gaps = 12/414 (3%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||||||||||||||||| |||||||||| |||| |||||| |||| |||||
Sbjct 560 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 501
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 500 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 441
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||||||||| ||||||||||||||||| ||||| |||| ||| ||| |||||| ||
Sbjct 440 TGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGATGCCTTGGTAGGCTTTTACCCTACC 381
Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243
|||||||||||| || | || ||| || |||| | | |||||| ||||
Sbjct 380 AACTAGCTAATCAGATATCGGCCGCTCCACGAGCATGAGGTCTTGCGATCCCCCACTTTC 321
Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC--CTCCATCAG 301
|| || |||||||||||||| | |||| | | ||||||||| ||||| |
Sbjct 320 ATCCGTAGATCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCACTCCA--GG 263
Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC 361
||| |||| | | |||||||||||| ||||||||| | || ||| | |||| |
Sbjct 262 GCACGTTCCGATATGTTACTCACCCGTTCGCCACTCG-CCGC----CAGGA--TTGCTCC 210
Query 362 C-TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| | | ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 209 CGCGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222286108992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |