Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2665 338 2e-90 >seq2665 Length=5473 Score = 338 bits (374), Expect = 2e-90 Identities = 327/414 (79%), Gaps = 12/414 (3%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||| Sbjct 560 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 501 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 500 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 441 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| ||||| |||| ||| ||| |||||| || Sbjct 440 TGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGATGCCTTGGTAGGCTTTTACCCTACC 381 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||| || |||| | | |||||| |||| Sbjct 380 AACTAGCTAATCAGATATCGGCCGCTCCACGAGCATGAGGTCTTGCGATCCCCCACTTTC 321 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC--CTCCATCAG 301 || || |||||||||||||| | |||| | | ||||||||| ||||| | Sbjct 320 ATCCGTAGATCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCACTCCA--GG 263 Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC 361 ||| |||| | | |||||||||||| ||||||||| | || ||| | |||| | Sbjct 262 GCACGTTCCGATATGTTACTCACCCGTTCGCCACTCG-CCGC----CAGGA--TTGCTCC 210 Query 362 C-TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | | ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 209 CGCGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222286108992