Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2665 313 7e-83 >seq2665 Length=5473 Score = 313 bits (346), Expect = 7e-83 Identities = 278/353 (79%), Gaps = 26/353 (7%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 ||||||||||||||||||| ||||| || ||||||||| ||||||||||| | |||| Sbjct 366 TCTGATTAGCTAGTTGGTAGGGTAAAAGCCTACCAAGGCATCGATCAGTAGCTGGTCTGA 425 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 426 GAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 485 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| |||||||| || |||||| |||||| |||||||||| || |||||| Sbjct 486 GGGGAATTTTGGACAATGGGGGCAACCCTGATCCAGCAATGCCGCGTGAGTGAAGAAGGC 545 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TA 378 |||||||| |||||||||| | | |||||| || Sbjct 546 CTTCGGGTTGTAAAGCTCTTTTGTTCGGGAAGAAACGCGCCGGGTTAATACCCTGGTGTA 605 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||||| | || |||| ||||||||||||||||||||||||||||||||||| Sbjct 606 ATGACGGTACCGAAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGA 665 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| || ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 666 AGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497460468608