Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 343 4e-92
>seq2665
Length=5473
Score = 343 bits (380), Expect = 4e-92
Identities = 318/399 (80%), Gaps = 8/399 (2%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| ||||||||||||||||||||||||||||||||||| |||| || ||||||| ||
Sbjct 625 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTAATCG 684
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||||||||||||||||| ||||| ||| |||| ||| |||| |||||| | ||
Sbjct 685 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGCAAGACAGATGTGAAATCCCCGGG 744
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG---CAGGAGGGGCAAGTGG 189
|| |||| || ||||| |||| |||||| |||||||||| || |||||| || |
Sbjct 745 CTTAACCTGGGAACTGCATTTGTGACTGCACGGCTAGAGTGTGTCA-GAGGGG--GGTAG 801
Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249
|||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||| |
Sbjct 802 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAATACCGATGGCGAAGGCAG 861
Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309
| |||| | |||||| || | || |||||||||||||||||||||||||||||||
Sbjct 862 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 921
Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369
||||||||||||||||| ||||||||| ||||| ||||||| | ||| || ||
Sbjct 922 CCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTCGGG--TCTTAATTGACTTGG 979
Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| |||||| ||||| |||| || |||||||||||
Sbjct 980 TAACGCAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTA 1018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203087897856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |