Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2665 343 4e-92 >seq2665 Length=5473 Score = 343 bits (380), Expect = 4e-92 Identities = 318/399 (80%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||||||||||||||||||||||||||||| |||| || ||||||| || Sbjct 625 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTAATCG 684 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||| ||| |||| ||| |||| |||||| | || Sbjct 685 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGCAAGACAGATGTGAAATCCCCGGG 744 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG---CAGGAGGGGCAAGTGG 189 || |||| || ||||| |||| |||||| |||||||||| || |||||| || | Sbjct 745 CTTAACCTGGGAACTGCATTTGTGACTGCACGGCTAGAGTGTGTCA-GAGGGG--GGTAG 801 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||| | Sbjct 802 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAATACCGATGGCGAAGGCAG 861 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 | |||| | |||||| || | || ||||||||||||||||||||||||||||||| Sbjct 862 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 921 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 ||||||||||||||||| ||||||||| ||||| ||||||| | ||| || || Sbjct 922 CCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTCGGG--TCTTAATTGACTTGG 979 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||||| ||||| |||| || ||||||||||| Sbjct 980 TAACGCAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTA 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203087897856