Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq846 192 1e-46
seq554 170 4e-40
seq242 167 4e-39
seq29 165 2e-38
seq165 149 1e-33
seq685 147 4e-33
seq102 145 1e-32
seq707 140 6e-31
seq156 131 3e-28
>seq846
Length=882505
Score = 192 bits (212), Expect = 1e-46
Identities = 177/223 (79%), Gaps = 1/223 (0%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 488436 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 488378
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| | || || || | ||| |||| |||| |||||| | | || |
Sbjct 488377 ACTGACTGGCTCAGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCC 488318
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| ||||| ||||||| | | |||||||||||| | | | |||||||||| || ||||||
Sbjct 488317 CATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 488258
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||||| ||| ||||||||||| ||||||||||||||||
Sbjct 488257 TGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 488215
>seq554
Length=1445144
Score = 170 bits (188), Expect = 4e-40
Identities = 195/258 (76%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 592836 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 592779
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| |||| |||||||||||||||||| | || | || |
Sbjct 592778 ATGCCCTTAGATGTCTGGGGCTGCACGCGCGCTACACTGATTGGCTCAGCATGTGTCTAC 592719
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| |||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 592718 CCTACGCCAACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 592659
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| || ||||| ||| | ||||||||
Sbjct 592658 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTCACGTTGATT 592599
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 592598 AAGTCCCTGCCCTTTGTA 592581
>seq242
Length=2598833
Score = 167 bits (184), Expect = 4e-39
Identities = 194/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||| | | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 1437107 CTTCTTAGAGGGCCAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1437164
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||| || |||||||||| | || | || |
Sbjct 1437165 ATGCCCTTAGATGTCCAGGGCTGCACGTGCACTACACTGACTGGCTCAGCATGTGTCTAC 1437224
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| |||||| | | || | | || || ||||||| | | ||||
Sbjct 1437225 CCTATGCCGACAGGTGCGGGTAACCCATTGAACCCCATTCATGATGGGGATCGGGGATTG 1437284
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||| ||||| || |||||| ||| ||||| ||| | ||||||||
Sbjct 1437285 CAATTATTCCCCATGAACGCGGAATTCCCAGTAAGTGCGGGTCATAAGCTCACGTTGATT 1437344
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1437345 AAGTCCCTGCCCTTTGTA 1437362
>seq29
Length=5344911
Score = 165 bits (182), Expect = 2e-38
Identities = 167/216 (77%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173
||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| |
Sbjct 4435966 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCACGCTACACTGAGTG 4436025
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
| || || || | ||| |||| |||| ||||||| | | || | | || |
Sbjct 4436026 ACTCAGCGTGTGTCTACCCTACGCCGACAGGTGTGGGTAACCCGTTGAACCCCATTCATA 4436085
Query 234 CTGGGGATAGAGCATTGCAATTATTGC-TCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292
||||||| | | |||||||||||| | | |||||||||| || |||||| ||| ||
Sbjct 4436086 ATGGGGATCGGGGATTGCAATTATTCCAAAATGAACGAGGAATTCCCAGTAAGTGCGGGT 4436145
Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||| ||| ||||||| ||||||||||||||||
Sbjct 4436146 CATAAGCTCGCATTGATTAAGTCCCTGCCCTTTGTA 4436181
>seq165
Length=3102812
Score = 149 bits (164), Expect = 1e-33
Identities = 191/258 (74%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| ||||| ||||||||||||||||
Sbjct 1783070 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 1783013
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || |
Sbjct 1783012 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 1782953
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| || | |||| | |||| | | || | | | | ||||||| | | ||||
Sbjct 1782952 CCTATGCTGACAGGTGCGTGTAACCCATTGAACCCCATTTATAATGGGGATTGGGGATTG 1782893
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | ||||||||| | |||||| | | ||||| || | | ||||||
Sbjct 1782892 CAATTATT-CCCATGGACGAGGAATTGCCAGTAAGTGTGGGTCATAAGATCACATTGATT 1782834
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1782833 AAGTCCCTGCCCTTTGTA 1782816
>seq685
Length=1154951
Score = 147 bits (162), Expect = 4e-33
Identities = 190/258 (74%), Gaps = 7/258 (3%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTA-TCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | | || | |||| | ||||||||| || |||||||||||||
Sbjct 548642 CTTCTTAGAGGGACAAGTGGGGTTCAGCC-ACCCAAGTTTGAG-CATTAACAGGTCTGTG 548699
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||| | |||||||||||| | || | || |
Sbjct 548700 ATGCCCTTAGATGTCCAGGGCTGCACACACGCTACACTGACTGGCTCAGTGTGTGTCTAC 548759
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| ||| ||| | | || | | | ||| ||||||| | | ||
Sbjct 548760 CCTACGCCGACAGGTGTGGATAACCCGTTGAACCCCATTTGTGATGGGGATTAGGGACTG 548819
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||| ||
Sbjct 548820 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCG----TT 548875
Query 311 ACGTCCCTGCCCTTTGTA 328
| |||||| |||||||||
Sbjct 548876 AAGTCCCTACCCTTTGTA 548893
>seq102
Length=3752443
Score = 145 bits (160), Expect = 1e-32
Identities = 191/258 (74%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||| | ||| | |||| ||| | ||||| |||||||||||||||||
Sbjct 2604199 TTCTTAGAGGGACAAGTGGCGTTCAGCCACCGGA-GATTGAG-CAATAACAGGTCTGTGA 2604256
Query 132 TGCCCTTAGATGTTCTGGGCC-GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
||||||||||||| ||||| | ||||| | |||||||| || | || || || |
Sbjct 2604257 TGCCCTTAGATGT-CTGGGTCTGCACGTGTGCTACACTAACTGGCTCAGCGTGTGTCTAC 2604315
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| || | || | |||||| | | || | | | ||| || |||| | | ||||
Sbjct 2604316 CCTGTGCTGACAGTTGCGGGTAACCCATTGAACCCCATTTGTGATGTGGATCGGGGATTG 2604375
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | || ||||||| || |||||| || ||||| ||| | | ||||||
Sbjct 2604376 CAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTCACATTGATT 2604435
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 2604436 AAGTCCCTGCCCTTTGTA 2604453
>seq707
Length=1104143
Score = 140 bits (154), Expect = 6e-31
Identities = 188/258 (73%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 964923 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 964866
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
||||||||||| || | || |||||||| |||||||||| | || || || |
Sbjct 964865 ATGCCCTTAGAGGTCCAGGATTGCACGCGCTCTACACTGACTGGCTCAGCGTGTGTCTAC 964806
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| |||| ||||| || | | | | | ||| ||||||| | | ||||
Sbjct 964805 CCTATGCCAACAGGTGCAGGTAACCTGTTGAGCCCCATTTGTGATGGGGATCGGGGATTG 964746
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | ||| |||||| || |||||| ||| ||||| | | | | ||||||
Sbjct 964745 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAACTCACATTGATT 964686
Query 311 ACGTCCCTGCCCTTTGTA 328
| | || |||||||||||
Sbjct 964685 AAGACCTTGCCCTTTGTA 964668
>seq156
Length=3147509
Score = 131 bits (144), Expect = 3e-28
Identities = 188/260 (72%), Gaps = 14/260 (5%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||| | | | ||| | || || ||||| |||||||||||||||
Sbjct 2541960 CTTCTTAGAGGGACAAGTGTTGTTCAGTCACCTG--AGATTGAG-CAATAACAGGTCTGT 2541904
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188
||||||||||||||| | |||| ||||| ||||||||||||| | || | || ||||
Sbjct 2541903 GATGCCCTTAGATGTCCAGGGCTGCACGTGCGCTACACTGACTGGCTCAGCATGTGTCAT 2541844
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
| | | || |||| ||||||| | || | | | ||| ||||| ||
Sbjct 2541843 C-CATACACCAACAGGTGTGGGTAACACGATGAATCCCATTTGTGATGGGG-------AT 2541792
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
| |||||||| | | | || ||||||| || | ||| || ||||| ||| | ||||||
Sbjct 2541791 TTCAATTATTCCCCATGAATGAGGAATACCCACGAAGTGCAGGTCATAAGCTCACGTTGA 2541732
Query 309 TTACGTCCCTGCCCTTTGTA 328
||| ||||||||||||||||
Sbjct 2541731 TTAAGTCCCTGCCCTTTGTA 2541712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947111749376
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