Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq846 192 1e-46 seq554 170 4e-40 seq242 167 4e-39 seq29 165 2e-38 seq165 149 1e-33 seq685 147 4e-33 seq102 145 1e-32 seq707 140 6e-31 seq156 131 3e-28 >seq846 Length=882505 Score = 192 bits (212), Expect = 1e-46 Identities = 177/223 (79%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 488436 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 488378 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | ||| |||| |||| |||||| | | || | Sbjct 488377 ACTGACTGGCTCAGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACCCGTTGAACCC 488318 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| Sbjct 488317 CATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 488258 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||| ||||||||||| |||||||||||||||| Sbjct 488257 TGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 488215 >seq554 Length=1445144 Score = 170 bits (188), Expect = 4e-40 Identities = 195/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 592836 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 592779 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| |||||||||||||||||| | || | || | Sbjct 592778 ATGCCCTTAGATGTCTGGGGCTGCACGCGCGCTACACTGATTGGCTCAGCATGTGTCTAC 592719 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 592718 CCTACGCCAACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 592659 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| || ||||| ||| | |||||||| Sbjct 592658 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTCACGTTGATT 592599 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 592598 AAGTCCCTGCCCTTTGTA 592581 >seq242 Length=2598833 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||| | | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1437107 CTTCTTAGAGGGCCAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1437164 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||| || |||||||||| | || | || | Sbjct 1437165 ATGCCCTTAGATGTCCAGGGCTGCACGTGCACTACACTGACTGGCTCAGCATGTGTCTAC 1437224 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | || || ||||||| | | |||| Sbjct 1437225 CCTATGCCGACAGGTGCGGGTAACCCATTGAACCCCATTCATGATGGGGATCGGGGATTG 1437284 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||| ||||| || |||||| ||| ||||| ||| | |||||||| Sbjct 1437285 CAATTATTCCCCATGAACGCGGAATTCCCAGTAAGTGCGGGTCATAAGCTCACGTTGATT 1437344 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1437345 AAGTCCCTGCCCTTTGTA 1437362 >seq29 Length=5344911 Score = 165 bits (182), Expect = 2e-38 Identities = 167/216 (77%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| | Sbjct 4435966 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCACGCTACACTGAGTG 4436025 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || || || | ||| |||| |||| ||||||| | | || | | || | Sbjct 4436026 ACTCAGCGTGTGTCTACCCTACGCCGACAGGTGTGGGTAACCCGTTGAACCCCATTCATA 4436085 Query 234 CTGGGGATAGAGCATTGCAATTATTGC-TCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||||||| | | |||||||||||| | | |||||||||| || |||||| ||| || Sbjct 4436086 ATGGGGATCGGGGATTGCAATTATTCCAAAATGAACGAGGAATTCCCAGTAAGTGCGGGT 4436145 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| ||| ||||||| |||||||||||||||| Sbjct 4436146 CATAAGCTCGCATTGATTAAGTCCCTGCCCTTTGTA 4436181 >seq165 Length=3102812 Score = 149 bits (164), Expect = 1e-33 Identities = 191/258 (74%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 1783070 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTG 1783013 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 1783012 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 1782953 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | |||| | |||| | | || | | | | ||||||| | | |||| Sbjct 1782952 CCTATGCTGACAGGTGCGTGTAACCCATTGAACCCCATTTATAATGGGGATTGGGGATTG 1782893 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||||||||| | |||||| | | ||||| || | | |||||| Sbjct 1782892 CAATTATT-CCCATGGACGAGGAATTGCCAGTAAGTGTGGGTCATAAGATCACATTGATT 1782834 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1782833 AAGTCCCTGCCCTTTGTA 1782816 >seq685 Length=1154951 Score = 147 bits (162), Expect = 4e-33 Identities = 190/258 (74%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTA-TCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | | || | |||| | ||||||||| || ||||||||||||| Sbjct 548642 CTTCTTAGAGGGACAAGTGGGGTTCAGCC-ACCCAAGTTTGAG-CATTAACAGGTCTGTG 548699 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| | |||||||||||| | || | || | Sbjct 548700 ATGCCCTTAGATGTCCAGGGCTGCACACACGCTACACTGACTGGCTCAGTGTGTGTCTAC 548759 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| ||| ||| | | || | | | ||| ||||||| | | || Sbjct 548760 CCTACGCCGACAGGTGTGGATAACCCGTTGAACCCCATTTGTGATGGGGATTAGGGACTG 548819 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||| || Sbjct 548820 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCG----TT 548875 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||| ||||||||| Sbjct 548876 AAGTCCCTACCCTTTGTA 548893 >seq102 Length=3752443 Score = 145 bits (160), Expect = 1e-32 Identities = 191/258 (74%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| | ||| | |||| ||| | ||||| ||||||||||||||||| Sbjct 2604199 TTCTTAGAGGGACAAGTGGCGTTCAGCCACCGGA-GATTGAG-CAATAACAGGTCTGTGA 2604256 Query 132 TGCCCTTAGATGTTCTGGGCC-GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||| ||||| | ||||| | |||||||| || | || || || | Sbjct 2604257 TGCCCTTAGATGT-CTGGGTCTGCACGTGTGCTACACTAACTGGCTCAGCGTGTGTCTAC 2604315 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || | |||||| | | || | | | ||| || |||| | | |||| Sbjct 2604316 CCTGTGCTGACAGTTGCGGGTAACCCATTGAACCCCATTTGTGATGTGGATCGGGGATTG 2604375 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | || ||||||| || |||||| || ||||| ||| | | |||||| Sbjct 2604376 CAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTCACATTGATT 2604435 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2604436 AAGTCCCTGCCCTTTGTA 2604453 >seq707 Length=1104143 Score = 140 bits (154), Expect = 6e-31 Identities = 188/258 (73%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 964923 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 964866 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||| || | || |||||||| |||||||||| | || || || | Sbjct 964865 ATGCCCTTAGAGGTCCAGGATTGCACGCGCTCTACACTGACTGGCTCAGCGTGTGTCTAC 964806 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| ||||| || | | | | | ||| ||||||| | | |||| Sbjct 964805 CCTATGCCAACAGGTGCAGGTAACCTGTTGAGCCCCATTTGTGATGGGGATCGGGGATTG 964746 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| |||||| || |||||| ||| ||||| | | | | |||||| Sbjct 964745 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAACTCACATTGATT 964686 Query 311 ACGTCCCTGCCCTTTGTA 328 | | || ||||||||||| Sbjct 964685 AAGACCTTGCCCTTTGTA 964668 >seq156 Length=3147509 Score = 131 bits (144), Expect = 3e-28 Identities = 188/260 (72%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | | | ||| | || || ||||| ||||||||||||||| Sbjct 2541960 CTTCTTAGAGGGACAAGTGTTGTTCAGTCACCTG--AGATTGAG-CAATAACAGGTCTGT 2541904 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCAT 188 ||||||||||||||| | |||| ||||| ||||||||||||| | || | || |||| Sbjct 2541903 GATGCCCTTAGATGTCCAGGGCTGCACGTGCGCTACACTGACTGGCTCAGCATGTGTCAT 2541844 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | | | || |||| ||||||| | || | | | ||| ||||| || Sbjct 2541843 C-CATACACCAACAGGTGTGGGTAACACGATGAATCCCATTTGTGATGGGG-------AT 2541792 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 | |||||||| | | | || ||||||| || | ||| || ||||| ||| | |||||| Sbjct 2541791 TTCAATTATTCCCCATGAATGAGGAATACCCACGAAGTGCAGGTCATAAGCTCACGTTGA 2541732 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||| Sbjct 2541731 TTAAGTCCCTGCCCTTTGTA 2541712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947111749376