Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 556 4e-156
seq2821 360 6e-97
seq3032 188 2e-45
>seq2665
Length=5473
Score = 556 bits (616), Expect = 4e-156
Identities = 423/495 (85%), Gaps = 6/495 (1%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2916 CGAGTCCGAATAGGGCGATTCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACTCA 2975
Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 2976 TGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCCACTAATGTTGAAAAA 3035
Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3036 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 3095
Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3096 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 3155
Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299
||||||||||||| ||||||||||||||||||||||||||||||| | || ||| |
Sbjct 3156 GCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGATGAGTGCGAG 3215
Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359
| ||||| || ||||||||| ||||| | ||||| || || || |||
Sbjct 3216 CTTGGGAGACAGACGCCGGGTGCTAACGTCCGACGTCAAGAGGGAAACAACCCAGACCGC 3275
Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419
||||||||| ||| ||| ||||||| || |||||||| || ||||| ||||
Sbjct 3276 CAGCTAAGGTCCC-AAAGATTGGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGT 3332
Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479
|||| |||||||| |||||||||| || |||||||| |||||| |||||||| ||||
Sbjct 3333 CAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGATCGA 3391
Query 480 GGAGTCGGGCGTGGA 494
| ||| ||| |||
Sbjct 3392 GTCGTCCTGCGCGGA 3406
>seq2821
Length=3560
Score = 360 bits (398), Expect = 6e-97
Identities = 375/484 (77%), Gaps = 10/484 (2%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| || |||||| | |||||||||| ||||||||||||| | |||||| ||||
Sbjct 985 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 1044
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
| |||| ||||||| |||||||| ||||||| ||||||||||| ||||||||
Sbjct 1045 GAGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAACCCACTTCCGTTGAAAAGG 1104
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
||||||||| ||||| | || |||||||||||| ||| || ||| |||||||||||||
Sbjct 1105 CAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 1164
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240
||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| ||
Sbjct 1165 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTCTGGGGGGTAGAGCACTGTTTCGG 1224
Query 241 CTA-GGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTA 298
||| ||||||||| |||||||||||||| |||||||||||||| | || ||| |
Sbjct 1225 CTAGGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCCAGAAGTGCCGA 1284
Query 299 CCGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356
| ||||| | ||| ||||||||| |||||| | ||| || || || |||
Sbjct 1285 GCATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGAC 1342
Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416
|||||||||| ||| || | | ||||| | ||||| || || ||| ||||
Sbjct 1343 CGTCAGCTAAGGTCCCAAAGTCCTGGTTAAGTGGTA--AACGATGTGGGAAGGCTTAGAC 1400
Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476
|||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||
Sbjct 1401 AGCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGT 1459
Query 477 CGAG 480
||||
Sbjct 1460 CGAG 1463
>seq3032
Length=2309
Score = 188 bits (208), Expect = 2e-45
Identities = 155/188 (82%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59
|||||| |||||||||| |||| || | | ||||||||||||| ||||||| |||
Sbjct 77 CGAGTCTGAACAGGGCGCGTCAGTTGCATGCTCTAGACCCGAAACCTGATGATCTAGCCA 136
Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119
||| |||| ||||||||||||||||||| ||||||| |||||| ||| ||||||||||
Sbjct 137 TGGGCAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACTCACGCCTGTTGAAAAA 196
Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179
| || ||||| |||||| |||||||||||||| || |||| ||||||||||||||||
Sbjct 197 GTCGGAGATGACCTGTGGCTAGGGGTGAAAGGCCAAGCAAAGCAGGAAATAGCTGGTTCT 256
Query 180 CTCCGAAA 187
| |||||
Sbjct 257 CCGCGAAA 264
Score = 138 bits (152), Expect = 4e-30
Identities = 105/124 (85%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 64 CAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAG 123
|||| ||||||||||||||||||| ||||||| |||||| ||| |||||||||| | |
Sbjct 269 CAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACTCACGCCTGTTGAAAAAGTCG 328
Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183
| ||||| |||||| |||||||||||||| || |||| ||||||||||||||||| |
Sbjct 329 GAGATGACCTGTGGCTAGGGGTGAAAGGCCAAGCAAAGCAGGAAATAGCTGGTTCTCCGC 388
Query 184 GAAA 187
||||
Sbjct 389 GAAA 392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689442579968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |