Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2665 556 4e-156 seq2821 360 6e-97 seq3032 188 2e-45 >seq2665 Length=5473 Score = 556 bits (616), Expect = 4e-156 Identities = 423/495 (85%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 2916 CGAGTCCGAATAGGGCGATTCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACTCA 2975 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 2976 TGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCCACTAATGTTGAAAAA 3035 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3036 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 3095 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3096 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 3155 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||||||| ||||||||||||||||||||||||||||||| | || ||| | Sbjct 3156 GCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGATGAGTGCGAG 3215 Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 | ||||| || ||||||||| ||||| | ||||| || || || ||| Sbjct 3216 CTTGGGAGACAGACGCCGGGTGCTAACGTCCGACGTCAAGAGGGAAACAACCCAGACCGC 3275 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||| ||| ||| ||||||| || |||||||| || ||||| |||| Sbjct 3276 CAGCTAAGGTCCC-AAAGATTGGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGT 3332 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 |||| |||||||| |||||||||| || |||||||| |||||| |||||||| |||| Sbjct 3333 CAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGATCGA 3391 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 3392 GTCGTCCTGCGCGGA 3406 >seq2821 Length=3560 Score = 360 bits (398), Expect = 6e-97 Identities = 375/484 (77%), Gaps = 10/484 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 985 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 1044 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 1045 GAGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAACCCACTTCCGTTGAAAAGG 1104 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||| ||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 1105 CAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 1164 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 1165 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTCTGGGGGGTAGAGCACTGTTTCGG 1224 Query 241 CTA-GGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTA 298 ||| ||||||||| |||||||||||||| |||||||||||||| | || ||| | Sbjct 1225 CTAGGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCCAGAAGTGCCGA 1284 Query 299 CCGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 1285 GCATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGAC 1342 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 |||||||||| ||| || | | ||||| | ||||| || || ||| |||| Sbjct 1343 CGTCAGCTAAGGTCCCAAAGTCCTGGTTAAGTGGTA--AACGATGTGGGAAGGCTTAGAC 1400 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 |||||||| |||||||| |||||||||| | |||||||| |||||| ||||||||||| Sbjct 1401 AGCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGT 1459 Query 477 CGAG 480 |||| Sbjct 1460 CGAG 1463 >seq3032 Length=2309 Score = 188 bits (208), Expect = 2e-45 Identities = 155/188 (82%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| |||||||||| |||| || | | ||||||||||||| ||||||| ||| Sbjct 77 CGAGTCTGAACAGGGCGCGTCAGTTGCATGCTCTAGACCCGAAACCTGATGATCTAGCCA 136 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||||||||||||||||| ||||||| |||||| ||| |||||||||| Sbjct 137 TGGGCAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACTCACGCCTGTTGAAAAA 196 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | || ||||| |||||| |||||||||||||| || |||| |||||||||||||||| Sbjct 197 GTCGGAGATGACCTGTGGCTAGGGGTGAAAGGCCAAGCAAAGCAGGAAATAGCTGGTTCT 256 Query 180 CTCCGAAA 187 | ||||| Sbjct 257 CCGCGAAA 264 Score = 138 bits (152), Expect = 4e-30 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 64 CAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAG 123 |||| ||||||||||||||||||| ||||||| |||||| ||| |||||||||| | | Sbjct 269 CAGGTTGAAGGTGCGGTAACACGCACTGGAGGACCGAACTCACGCCTGTTGAAAAAGTCG 328 Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 | ||||| |||||| |||||||||||||| || |||| ||||||||||||||||| | Sbjct 329 GAGATGACCTGTGGCTAGGGGTGAAAGGCCAAGCAAAGCAGGAAATAGCTGGTTCTCCGC 388 Query 184 GAAA 187 |||| Sbjct 389 GAAA 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689442579968