Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq2665 408 8e-112
seq2821 210 4e-52
>seq2665
Length=5473
Score = 408 bits (452), Expect = 8e-112
Identities = 282/319 (88%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2280 AGTGCACATGGTGGATGCCTTGGCGATGTCAGGCGATGAAGGACGTAGTAGCTTGCGATA 2339
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2340 AGCTGCGGGGAGCGAGCAAACACGCATTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 2399
Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180
| ||| |||||| | || ||||||||||||| || | |||||||||||||||||||||||
Sbjct 2400 CTTTTAGGTCATCGTATTCTGAATACATAGGAATACGAAGCGAACGCGGCGAACTGAAAC 2459
Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2460 ATCTAAGTAGCTGCAGGAACAGAAATCAACCGAGATTCCCAAAGTAGTGGCAAGCGAAAT 2519
Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300
|||| |||||| | || ||| | |||||| || ||||||||| | |||||
Sbjct 2520 GGGAAGAGCCTGCAAGATTTAGCATCACGGATAGTCAAACGCTCTGGAAAGTGCGGCCAT 2579
Query 301 AGCGGGTGATAGCCCCGTA 319
|| ||||||||| ||||||
Sbjct 2580 AGAGGGTGATAGTCCCGTA 2598
>seq2821
Length=3560
Score = 210 bits (232), Expect = 4e-52
Identities = 245/328 (75%), Gaps = 16/328 (5%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| | ||||||||||||||| | | |||||||||| ||||| |||| |||||||
Sbjct 373 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGATA 432
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| ||| ||| ||||| || ||| ||| |||| || |||||||| ||||| |
Sbjct 433 AGCTTCGGTGAGGTGGCAAATGACCTGTGACCCGGAGATCTCTGAATGGGGGAACCCACC 492
Query 121 C--CTT----TGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAAC 174
| | | ||| || | |||||| |||||| | | |||||| || ||||
Sbjct 493 TAGCATAAGCTAGGT-ATCTTAACCTGAATCCATAGGGTTAAGAGGCGAACCAGGGGAAC 551
Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234
||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 552 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 611
Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGTGGAATCCTCTGGAAAT 291
|||| |||| |||| ||| |||||| |||| ||| |||| |||||||||
Sbjct 612 CGAACGGGGACCAGCCCTTA------AGTTGATTTGAGAGTAGCGGAACGCTCTGGAAAG 665
Query 292 AGGAGCCATAGCGGGTGATAGCCCCGTA 319
| ||||||| |||||||||||| |||
Sbjct 666 TGCGGCCATAGTGGGTGATAGCCCTGTA 693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918314432672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |