Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2665 408 8e-112 seq2821 210 4e-52 >seq2665 Length=5473 Score = 408 bits (452), Expect = 8e-112 Identities = 282/319 (88%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2280 AGTGCACATGGTGGATGCCTTGGCGATGTCAGGCGATGAAGGACGTAGTAGCTTGCGATA 2339 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 2340 AGCTGCGGGGAGCGAGCAAACACGCATTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 2399 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | ||| |||||| | || ||||||||||||| || | ||||||||||||||||||||||| Sbjct 2400 CTTTTAGGTCATCGTATTCTGAATACATAGGAATACGAAGCGAACGCGGCGAACTGAAAC 2459 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 2460 ATCTAAGTAGCTGCAGGAACAGAAATCAACCGAGATTCCCAAAGTAGTGGCAAGCGAAAT 2519 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 |||| |||||| | || ||| | |||||| || ||||||||| | ||||| Sbjct 2520 GGGAAGAGCCTGCAAGATTTAGCATCACGGATAGTCAAACGCTCTGGAAAGTGCGGCCAT 2579 Query 301 AGCGGGTGATAGCCCCGTA 319 || ||||||||| |||||| Sbjct 2580 AGAGGGTGATAGTCCCGTA 2598 >seq2821 Length=3560 Score = 210 bits (232), Expect = 4e-52 Identities = 245/328 (75%), Gaps = 16/328 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| |||| ||||||| Sbjct 373 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGATA 432 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||| ||| ||||| || ||| ||| |||| || |||||||| ||||| | Sbjct 433 AGCTTCGGTGAGGTGGCAAATGACCTGTGACCCGGAGATCTCTGAATGGGGGAACCCACC 492 Query 121 C--CTT----TGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAAC 174 | | | ||| || | |||||| |||||| | | |||||| || |||| Sbjct 493 TAGCATAAGCTAGGT-ATCTTAACCTGAATCCATAGGGTTAAGAGGCGAACCAGGGGAAC 551 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 552 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 611 Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGTGGAATCCTCTGGAAAT 291 |||| |||| |||| ||| |||||| |||| ||| |||| ||||||||| Sbjct 612 CGAACGGGGACCAGCCCTTA------AGTTGATTTGAGAGTAGCGGAACGCTCTGGAAAG 665 Query 292 AGGAGCCATAGCGGGTGATAGCCCCGTA 319 | ||||||| |||||||||||| ||| Sbjct 666 TGCGGCCATAGTGGGTGATAGCCCTGTA 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918314432672