Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2821 340 6e-91 seq2665 327 4e-87 seq3032 239 2e-60 >seq2821 Length=3560 Score = 340 bits (376), Expect = 6e-91 Identities = 419/567 (74%), Gaps = 18/567 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| | | |||| || Sbjct 2715 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTGCGACCGATTTCC 2656 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 2655 GACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 2597 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||||||| |||||||| | | || ||| | || ||| |||||| || | Sbjct 2596 TCAAACTGCCCACCATACACTGTCCTCGATCCGGATAACGGACCAGAGTTAGAA--CCTC 2539 Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | | | ||| |||||||||||| | | |||||| ||| |||| ||| ||| | Sbjct 2538 AAGGTTGCCAGGGTGGTATTTCAAGGATGGCTCCACGCAGACTGGCGTCCACGCTTCAAA 2479 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | |||||||||||||||||||| | | || ||| | | |||||| ||| ||||| Sbjct 2478 GCCTCCCACCTATCCTACACAAGCAAGCTCAAAGTCCAGTGCAAAGCTACAGTAAAGGTT 2419 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTGCAATTTCA 356 | |||||||||| |||| |||||| || || ||||||| || | | |||||||| Sbjct 2418 CACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTCA 2360 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | | | || ||| |||||||| | ||||||||||||||||||||||||||||||| Sbjct 2359 CTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTA 2300 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 2299 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGC 2240 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 ||| || | || || | || ||| || | |||||||||| ||| Sbjct 2239 TTCGATCAAGAGCTTCGC----------TTGCGCTAACCCCATCAATTAACCTTCCGGCA 2190 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| || ||||| || Sbjct 2189 CCGGGCAGGCGTCACACCCTATACGTC 2163 >seq2665 Length=5473 Score = 327 bits (362), Expect = 4e-87 Identities = 414/566 (73%), Gaps = 25/566 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC--ACCACCTGATTG 58 ||||||||| ||||||||||| |||| | ||| ||| || |||| | ||| ||| Sbjct 4628 TCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCAC--GATGT 4571 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 || ||| | || | ||||| | | ||||||||||| ||||||||| | ||||||| Sbjct 4570 CCGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTACACTTTGGGAGGAGA-CCGCCCC 4512 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 ||| ||||| || |||| ||||||||||| |||| ||| | |||||||||||||| | Sbjct 4511 AGTCAAACTGCCTACCATGCACTGTCCCCGACCCGGATGACGGGCCAAGGTTAGAACCTC 4452 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | ||| |||||||||||| | |||||| ||| |||| |||| ||| | Sbjct 4451 AAACAAACCAGGGTGGTATTTCAAGGTTGGCTCCACGGGAACTGGCGTCCCCGCTTCAAA 4392 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | ||||||||||||||||||| | | | || ||||| | |||||| ||| ||||| Sbjct 4391 GCCTCCCACCTATCCTACACAGATTGGTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTT 4332 Query 299 CC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | ||||||||| |||| |||||| | | ||||| | || | | ||| ||| | Sbjct 4331 CATGGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGC 4272 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || || ||||||| || |||||||||||||||||||||||||||||||| Sbjct 4271 TGAGTCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTAC 4212 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || Sbjct 4211 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACT 4152 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 ||||| | | || ||| ||| ||| |||| |||||||||| Sbjct 4151 TCAATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGCAC 4111 Query 538 CGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||| || ||||| || Sbjct 4110 CGGGCAGGCGTCACACCCTATACGTC 4085 >seq3032 Length=2309 Score = 239 bits (264), Expect = 2e-60 Identities = 260/343 (76%), Gaps = 23/343 (7%) Strand=Plus/Minus Query 231 GCATCATAGTCTCCCACCTATCCTACACA----AACC---GCACCGAATGCCAATACCAA 283 || |||||| ||||||||||||||||||| |||| ||||| | | | || Sbjct 1586 GCTTCATAGCCTCCCACCTATCCTACACATGGGAACCCTGGCACC-------ACTGCAAA 1534 Query 284 GCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTC 342 ||| ||| ||||| | |||||||||| |||| ||||| | | ||||||| || Sbjct 1533 GCTGGAGTAAAGGTGCACGGGGTCTTTCCGTCTGACCGCGGGTACTCCGCATCTTCACGG 1474 Query 343 GTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTG 402 | | ||||||| | | | ||| | |||||||| ||| ||||||||||||||||||| Sbjct 1473 AGAATTCAATTTCGCTGAGTTGGTGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTG 1414 Query 403 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCG 462 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1413 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCG 1354 Query 463 CCGTTTACTGGGGCTTCAATTACCCGCCTC-ACACACCACGTGGTGTGCTCACGAGTCCT 521 |||||||| ||||||||| || || || || | || | || ||| ||| Sbjct 1353 CCGTTTACCGGGGCTTCAGTTTGGGGCTTCGACCCCCCCCTTG-------CACCCCTCCC 1301 Query 522 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||| |||||||||||||||||| || ||||| ||| Sbjct 1300 TTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCG 1258 Score = 107 bits (118), Expect = 7e-21 Identities = 112/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||||| ||| ||| ||| || ||||| | |||| || Sbjct 1820 TCGACTTGTCGGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCGTCGAGCGATTTCC 1761 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| ||||| |||||| | ||||||||||||| ||||||| ||| |||||||||| Sbjct 1760 GACCGCTCTGAGCCAACCTTCGCGCGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCAG 1702 Query 121 TTAAACTACCCACCAGGCACTGTCCC 146 | ||||| ||| ||| ||| ||||| Sbjct 1701 TCAAACTCCCCGCCATGCAGGGTCCC 1676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702241387392