Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq2821 340 6e-91
seq2665 327 4e-87
seq3032 239 2e-60
>seq2821
Length=3560
Score = 340 bits (376), Expect = 6e-91
Identities = 419/567 (74%), Gaps = 18/567 (3%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| ||| ||||||||||||||| | ||| ||| ||| |||| | | |||| ||
Sbjct 2715 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTGCGACCGATTTCC 2656
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
||| | ||||| | ||||| | | |||||||||| ||| ||||| | |||||||||
Sbjct 2655 GACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 2597
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180
| ||||| ||||||| |||||||| | | || ||| | || ||| |||||| || |
Sbjct 2596 TCAAACTGCCCACCATACACTGTCCTCGATCCGGATAACGGACCAGAGTTAGAA--CCTC 2539
Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
| | | ||| |||||||||||| | | |||||| ||| |||| ||| ||| |
Sbjct 2538 AAGGTTGCCAGGGTGGTATTTCAAGGATGGCTCCACGCAGACTGGCGTCCACGCTTCAAA 2479
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298
| |||||||||||||||||||| | | || ||| | | |||||| ||| |||||
Sbjct 2478 GCCTCCCACCTATCCTACACAAGCAAGCTCAAAGTCCAGTGCAAAGCTACAGTAAAGGTT 2419
Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTGCAATTTCA 356
| |||||||||| |||| |||||| || || ||||||| || | | ||||||||
Sbjct 2418 CACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTCA 2360
Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416
| | | || ||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 2359 CTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTA 2300
Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 2299 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGC 2240
Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536
||| || | || || | || ||| || | |||||||||| |||
Sbjct 2239 TTCGATCAAGAGCTTCGC----------TTGCGCTAACCCCATCAATTAACCTTCCGGCA 2190
Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563
|||||||||||||| || ||||| ||
Sbjct 2189 CCGGGCAGGCGTCACACCCTATACGTC 2163
>seq2665
Length=5473
Score = 327 bits (362), Expect = 4e-87
Identities = 414/566 (73%), Gaps = 25/566 (4%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC--ACCACCTGATTG 58
||||||||| ||||||||||| |||| | ||| ||| || |||| | ||| |||
Sbjct 4628 TCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCAC--GATGT 4571
Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118
|| ||| | || | ||||| | | ||||||||||| ||||||||| | |||||||
Sbjct 4570 CCGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTACACTTTGGGAGGAGA-CCGCCCC 4512
Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178
||| ||||| || |||| ||||||||||| |||| ||| | |||||||||||||| |
Sbjct 4511 AGTCAAACTGCCTACCATGCACTGTCCCCGACCCGGATGACGGGCCAAGGTTAGAACCTC 4452
Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
| ||| |||||||||||| | |||||| ||| |||| |||| ||| |
Sbjct 4451 AAACAAACCAGGGTGGTATTTCAAGGTTGGCTCCACGGGAACTGGCGTCCCCGCTTCAAA 4392
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298
| ||||||||||||||||||| | | | || ||||| | |||||| ||| |||||
Sbjct 4391 GCCTCCCACCTATCCTACACAGATTGGTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTT 4332
Query 299 CC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357
| ||||||||| |||| |||||| | | ||||| | || | | ||| ||| |
Sbjct 4331 CATGGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGC 4272
Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417
| | || || ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 4271 TGAGTCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTAC 4212
Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 4211 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACT 4152
Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537
||||| | | || ||| ||| ||| |||| ||||||||||
Sbjct 4151 TCAATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGCAC 4111
Query 538 CGGGCAGGCGTCAGTCCGTATACCTC 563
||||||||||||| || ||||| ||
Sbjct 4110 CGGGCAGGCGTCACACCCTATACGTC 4085
>seq3032
Length=2309
Score = 239 bits (264), Expect = 2e-60
Identities = 260/343 (76%), Gaps = 23/343 (7%)
Strand=Plus/Minus
Query 231 GCATCATAGTCTCCCACCTATCCTACACA----AACC---GCACCGAATGCCAATACCAA 283
|| |||||| ||||||||||||||||||| |||| ||||| | | | ||
Sbjct 1586 GCTTCATAGCCTCCCACCTATCCTACACATGGGAACCCTGGCACC-------ACTGCAAA 1534
Query 284 GCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTC 342
||| ||| ||||| | |||||||||| |||| ||||| | | ||||||| ||
Sbjct 1533 GCTGGAGTAAAGGTGCACGGGGTCTTTCCGTCTGACCGCGGGTACTCCGCATCTTCACGG 1474
Query 343 GTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTG 402
| | ||||||| | | | ||| | |||||||| ||| |||||||||||||||||||
Sbjct 1473 AGAATTCAATTTCGCTGAGTTGGTGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTG 1414
Query 403 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCG 462
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1413 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCG 1354
Query 463 CCGTTTACTGGGGCTTCAATTACCCGCCTC-ACACACCACGTGGTGTGCTCACGAGTCCT 521
|||||||| ||||||||| || || || || | || | || ||| |||
Sbjct 1353 CCGTTTACCGGGGCTTCAGTTTGGGGCTTCGACCCCCCCCTTG-------CACCCCTCCC 1301
Query 522 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564
|||||||||| |||||||||||||||||| || ||||| |||
Sbjct 1300 TTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCG 1258
Score = 107 bits (118), Expect = 7e-21
Identities = 112/146 (77%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| |||||||||||| ||| ||| ||| || ||||| | |||| ||
Sbjct 1820 TCGACTTGTCGGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCGTCGAGCGATTTCC 1761
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
||| ||||| |||||| | ||||||||||||| ||||||| ||| ||||||||||
Sbjct 1760 GACCGCTCTGAGCCAACCTTCGCGCGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCAG 1702
Query 121 TTAAACTACCCACCAGGCACTGTCCC 146
| ||||| ||| ||| ||| |||||
Sbjct 1701 TCAAACTCCCCGCCATGCAGGGTCCC 1676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702241387392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |