Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2665 150 4e-34 >seq2665 Length=5473 Score = 150 bits (166), Expect = 4e-34 Identities = 206/286 (72%), Gaps = 9/286 (3%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCAC---- 56 ||||||||||||| ||||||||| ||||||||| | ||||| || ||| Sbjct 653 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTTCGGTACCGTCATTACACCAGGGTA 594 Query 57 ---ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113 || || |||| ||||| | |||||| ||||||| ||| || ||||| || Sbjct 593 TTAACCCGGCGCGTTTC-TTCCCGAACAAAAGAGCTTTACAACCCGAAGG-CCTTCTTCA 536 Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 |||||| | | ||||| |||| | | |||||| |||| ||||| ||||||||||| Sbjct 535 CTCACGCGGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTGCTGCCT 476 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233 ||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | | Sbjct 475 CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGC 416 Query 234 TATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || |||| | || ||| ||| |||||| || |||| ||||| Sbjct 415 TACTGATCGATGCCTTGGTAGGCTTTTACCCTACCAACTAGCTAAT 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068700419904