Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1594 98.7 4e-15 >seq1594 Length=153964 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | || | |||||| |||||||||||||||| ||||| || ||||||| Sbjct 136819 CTCCTTGAGGCGTGGGACGCCCAGTGTCACGTTCTTGGCCGACACGCCAGCGTAGTGGAA 136760 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | |||||||| ||||||| |||||||| | |||| |||| || || | Sbjct 136759 GGTGTTGAGGGTCATCTGCGTGGCCGGCTCGCCCAATGACTGCGCCGCCAGCGCCCCCCC 136700 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 136699 CATCTCCCCGGG 136688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084484266363966