Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1826 251 1e-64 seq2 187 4e-45 seq3 149 1e-33 seq392 147 3e-33 seq421 145 1e-32 seq5 125 1e-26 seq1 116 6e-24 >seq1826 Length=21048 Score = 251 bits (278), Expect = 1e-64 Identities = 209/252 (83%), Gaps = 14/252 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 416 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 474 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | | || ||| || Sbjct 475 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 531 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 532 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 589 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 590 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 649 Query 247 TATCAATCTGTC 258 |||| ||||||| Sbjct 650 TATCGATCTGTC 661 Score = 251 bits (278), Expect = 1e-64 Identities = 209/252 (83%), Gaps = 14/252 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 8249 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 8307 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | | || ||| || Sbjct 8308 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 8364 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 8365 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 8422 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 8423 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 8482 Query 247 TATCAATCTGTC 258 |||| ||||||| Sbjct 8483 TATCGATCTGTC 8494 >seq2 Length=199619895 Score = 187 bits (206), Expect = 4e-45 Identities = 176/220 (80%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 41 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAAT 100 || ||||||||| ||||||||||||||||||| |||| ||| | |||||| | ||| | Sbjct 164836054 AATATCTAAGGGTATCACAGACCTGTTATTGC-TCAATCTTA-AGTGGCTGAACACCACT 164836111 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACCATA--GTCGATGGGG--CTATTTAGCAGGTTA 156 ||||||||||||| | | |||||||| | |||| ||| | |||| | | Sbjct 164836112 TGTCCCTCTAAGAATTTGGACGCCAACCATTTGGGGGATGCATAACTAGTCAGCATGCCA 164836171 Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||| ||||| ||||||||||||||||| ||||| |||||||||| |||||| Sbjct 164836172 GAGTCTCGTTCATTATCAGAATTAACCAGACAAATTGCTCCATCAACTAAGAATGGCCAT 164836231 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||| |||||| ||||||||||||| ||||| Sbjct 164836232 GCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTG 164836271 Score = 136 bits (150), Expect = 6e-30 Identities = 100/115 (87%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | ||| |||||||| ||||||||||||||||| ||||| ||| |||| Sbjct 12476403 CTAGTTAGCATGCCAAG-TCTCGTTCATTATCGGAATTAACCAGCCAAATTGCTCTACCA 12476461 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||||||| ||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct 12476462 ACTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATTGATCTG 12476516 >seq3 Length=204416410 Score = 149 bits (164), Expect = 1e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||||||||||||||||||||||||||| |||||||| Sbjct 40094736 CTAGTTAGCATGCCAGAGTCTCATTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 40094795 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||| |||| |||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct 40094796 ACTACGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTG 40094850 >seq392 Length=508387 Score = 147 bits (162), Expect = 3e-33 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||| ||||||||||||||||||||||||| |||||||| Sbjct 38771 CTAGTTAGCATGCCAGAGTCTCGTTTGTTATCGGAATTAACCAGACAAATCGCTCCACCA 38712 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 38711 ACTAAGAACGGCCATGCACCGCCACCCACAGAATCGAGAAAGAGCTATC 38663 >seq421 Length=367976 Score = 145 bits (160), Expect = 1e-32 Identities = 185/250 (74%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| | | | |||||| || |||| || ||||||||||| | Sbjct 283295 GTCAGTGTAGCACGTGTGCATTCATGGATATCTAATGGTATCATAGGCCTGTTATTGC-T 283237 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA--- 131 || ||| | || ||| | |||| | || || |||| ||| | ||||||||| Sbjct 283236 AAATCTTG-AGTGACTGAATGCCACTTGTTCCACTAACAAGTTGGACACCAACCACTCAG 283178 Query 132 --GTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 |||| || | | | |||| | || ||||| ||| ||||| ||||||||||||| Sbjct 283177 GGGTCGCATAA--CCAGTAAGCATGCCAAAGTCTCATTCATTATCAGAATTAACCAGACC 283120 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||| ||| |||||||| || ||||||| ||| ||||| Sbjct 283119 AATCACTCCACCAACTAAGAATGGCTGTGCACCACAGTTCACAGAATCATGAAGGAGCTC 283060 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 283059 TCAATCTGTC 283050 >seq5 Length=150641573 Score = 125 bits (138), Expect = 1e-26 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 121599197 TATCAGAATTAATCAGACAAATCGTTCCACCAACTAAGAACGGCCATGCACCACCACCCA 121599256 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||||| Sbjct 121599257 CAGAATCGAGAAAGAGCTATTGATCTGTC 121599285 >seq1 Length=263920458 Score = 116 bits (128), Expect = 6e-24 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| ||| |||||| ||| |||||||||||| | |||| ||||||||||| || ||||| Sbjct 6082044 TCTTGTTTGTTATCAGAAATAACCAGACAAACCGTTCCATCAACTAAGAACAGCAATGCA 6082103 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| ||||| |||||||| |||||||||||| Sbjct 6082104 CCACCACCCACAGAATTGAGAAAGAGTTATCAATCTGTC 6082142 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||||||| | ||||| |||| ||| ||||||||||||| || || ||| Sbjct 102992990 GTCTCATTCGTTATTGAAATTAGCCAGGCAAGCTGTTCCACCAACTAAGTACAGCAATGA 102993049 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | ||| ||| ||||||||||||||||||||| Sbjct 102993050 CTCTCCAACCACAGAATCAAGAAAGAGCTATCA 102993082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796750158417