Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10]
6,457 sequences; 1,799,143,587 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1826 251 1e-64
seq2 187 4e-45
seq3 149 1e-33
seq392 147 3e-33
seq421 145 1e-32
seq5 125 1e-26
seq1 116 6e-24
>seq1826
Length=21048
Score = 251 bits (278), Expect = 1e-64
Identities = 209/252 (83%), Gaps = 14/252 (6%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 416 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 474
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| | |||| | |||||||||||||| | | || ||| ||
Sbjct 475 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 531
Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| ||| |||||| | | ||||||||||||||||||||||||||||
Sbjct 532 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 589
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
|||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 590 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 649
Query 247 TATCAATCTGTC 258
|||| |||||||
Sbjct 650 TATCGATCTGTC 661
Score = 251 bits (278), Expect = 1e-64
Identities = 209/252 (83%), Gaps = 14/252 (6%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 8249 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 8307
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134
||| || | |||||| | |||| | |||||||||||||| | | || ||| ||
Sbjct 8308 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TC 8364
Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| |||| ||| |||||| | | ||||||||||||||||||||||||||||
Sbjct 8365 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 8422
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
|||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 8423 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGC 8482
Query 247 TATCAATCTGTC 258
|||| |||||||
Sbjct 8483 TATCGATCTGTC 8494
>seq2
Length=199619895
Score = 187 bits (206), Expect = 4e-45
Identities = 176/220 (80%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 41 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAAT 100
|| ||||||||| ||||||||||||||||||| |||| ||| | |||||| | ||| |
Sbjct 164836054 AATATCTAAGGGTATCACAGACCTGTTATTGC-TCAATCTTA-AGTGGCTGAACACCACT 164836111
Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACCATA--GTCGATGGGG--CTATTTAGCAGGTTA 156
||||||||||||| | | |||||||| | |||| ||| | |||| | |
Sbjct 164836112 TGTCCCTCTAAGAATTTGGACGCCAACCATTTGGGGGATGCATAACTAGTCAGCATGCCA 164836171
Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216
||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 164836172 GAGTCTCGTTCATTATCAGAATTAACCAGACAAATTGCTCCATCAACTAAGAATGGCCAT 164836231
Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
||||||||||||| |||||| ||||||||||||| |||||
Sbjct 164836232 GCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTG 164836271
Score = 136 bits (150), Expect = 6e-30
Identities = 100/115 (87%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | ||| |||||||| ||||||||||||||||| ||||| ||| ||||
Sbjct 12476403 CTAGTTAGCATGCCAAG-TCTCGTTCATTATCGGAATTAACCAGCCAAATTGCTCTACCA 12476461
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
|||||||| ||||||||||||||||||| |||||| |||||||||||| |||||
Sbjct 12476462 ACTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATTGATCTG 12476516
>seq3
Length=204416410
Score = 149 bits (164), Expect = 1e-33
Identities = 102/115 (89%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 40094736 CTAGTTAGCATGCCAGAGTCTCATTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 40094795
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
|||| |||| |||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 40094796 ACTACGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTG 40094850
>seq392
Length=508387
Score = 147 bits (162), Expect = 3e-33
Identities = 98/109 (90%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 38771 CTAGTTAGCATGCCAGAGTCTCGTTTGTTATCGGAATTAACCAGACAAATCGCTCCACCA 38712
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
|||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 38711 ACTAAGAACGGCCATGCACCGCCACCCACAGAATCGAGAAAGAGCTATC 38663
>seq421
Length=367976
Score = 145 bits (160), Expect = 1e-32
Identities = 185/250 (74%), Gaps = 10/250 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || |||| | | | |||||| || |||| || ||||||||||| |
Sbjct 283295 GTCAGTGTAGCACGTGTGCATTCATGGATATCTAATGGTATCATAGGCCTGTTATTGC-T 283237
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA--- 131
|| ||| | || ||| | |||| | || || |||| ||| | |||||||||
Sbjct 283236 AAATCTTG-AGTGACTGAATGCCACTTGTTCCACTAACAAGTTGGACACCAACCACTCAG 283178
Query 132 --GTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|||| || | | | |||| | || ||||| ||| ||||| |||||||||||||
Sbjct 283177 GGGTCGCATAA--CCAGTAAGCATGCCAAAGTCTCATTCATTATCAGAATTAACCAGACC 283120
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
||||||||||||||||||||| ||| |||||||| || ||||||| ||| |||||
Sbjct 283119 AATCACTCCACCAACTAAGAATGGCTGTGCACCACAGTTCACAGAATCATGAAGGAGCTC 283060
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 283059 TCAATCTGTC 283050
>seq5
Length=150641573
Score = 125 bits (138), Expect = 1e-26
Identities = 81/89 (91%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121599197 TATCAGAATTAATCAGACAAATCGTTCCACCAACTAAGAACGGCCATGCACCACCACCCA 121599256
Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| |||||||||||| |||||||
Sbjct 121599257 CAGAATCGAGAAAGAGCTATTGATCTGTC 121599285
>seq1
Length=263920458
Score = 116 bits (128), Expect = 6e-24
Identities = 85/99 (86%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
||| ||| |||||| ||| |||||||||||| | |||| ||||||||||| || |||||
Sbjct 6082044 TCTTGTTTGTTATCAGAAATAACCAGACAAACCGTTCCATCAACTAAGAACAGCAATGCA 6082103
Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||| ||||| |||||||| ||||||||||||
Sbjct 6082104 CCACCACCCACAGAATTGAGAAAGAGTTATCAATCTGTC 6082142
Score = 82.4 bits (90), Expect = 1e-13
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| |||||||| | ||||| |||| ||| ||||||||||||| || || |||
Sbjct 102992990 GTCTCATTCGTTATTGAAATTAGCCAGGCAAGCTGTTCCACCAACTAAGTACAGCAATGA 102993049
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCA 251
| ||| ||| |||||||||||||||||||||
Sbjct 102993050 CTCTCCAACCACAGAATCAAGAAAGAGCTATCA 102993082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796750158417
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |