Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10]
6,457 sequences; 1,799,143,587 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1826 457 3e-126
seq5 127 6e-27
seq8 86.0 2e-14
seq16 80.6 8e-13
>seq1826
Length=21048
Score = 457 bits (506), Expect = 3e-126
Identities = 415/514 (81%), Gaps = 14/514 (3%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 1381 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1440
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1500
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 1501 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAG 1560
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| | ||||||||||||||||||||||||| ||| ||||| | |||||| | |
Sbjct 1561 GCGCAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGCGTCGTCGCCGCCAC 1620
Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----G 295
|| | |||||| | | ||||| || ||||||| | | || | | || |
Sbjct 1621 GGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGCCGGGCGAGCCCGGG 1680
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTATT 352
|||| |||| ||| |||||| ||| | | || || ||| | | | | |||||||||
Sbjct 1681 TTGG-TTTTGGTCTGATAAATGCACGCATCCCCGGAGGTCAGCGCTCGTCGGCATGTATT 1739
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAACT 410
||||||||||||||||| |||||||| | | | || | | |||| ||| ||||||
Sbjct 1740 AGCTCTAGAATTACCACAGTTATCCAAGGAACGGGGGGAGCGACCAAAGGAACCATAACT 1799
Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470
||||||||||||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct 1800 GATTTAATGAGCCATTCGCAGTTTCACTGTAACGCCCGTGTGTACTTAGACATGCATGGC 1859
Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||| ||||||||||
Sbjct 1860 TTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1892
Score = 453 bits (502), Expect = 3e-125
Identities = 415/514 (81%), Gaps = 15/514 (3%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 9206 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 9265
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9266 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 9325
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 9326 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAG 9385
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| | ||||||||||||||||||||||||| ||| ||||| | |||||| | |
Sbjct 9386 GCGCAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGCGTCGTCGCCGCCAC 9445
Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----G 295
|| | |||||| | | ||||| || ||||||| | | || | | || |
Sbjct 9446 -GGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGCCGGGCGAGCCCGGG 9504
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTATT 352
|||| |||| ||| |||||| ||| | | || || ||| | | | | |||||||||
Sbjct 9505 TTGG-TTTTGGTCTGATAAATGCACGCATCCCCGGAGGTCAGCGCTCGTCGGCATGTATT 9563
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAACT 410
||||||||||||||||| |||||||| | | | || | | |||| ||| ||||||
Sbjct 9564 AGCTCTAGAATTACCACAGTTATCCAAGGAACGGGGGGAGCGACCAAAGGAACCATAACT 9623
Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470
||||||||||||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct 9624 GATTTAATGAGCCATTCGCAGTTTCACTGTAACGCCCGTGTGTACTTAGACATGCATGGC 9683
Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||| ||||||||||
Sbjct 9684 TTAATCTTTGAGACAAGCATATG-CTACTGGCAG 9716
>seq5
Length=150641573
Score = 127 bits (140), Expect = 6e-27
Identities = 89/100 (89%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||||||||||||||||||||||| ||||||||||||| | | ||||||||||||
Sbjct 107179670 ATAACTGATTTAATGAGCCATTCACAGTTTCACTGTAATGCCCATGTGTACTTAGACATG 107179611
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||| ||||||||||
Sbjct 107179610 CATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 107179572
>seq8
Length=3271537
Score = 86.0 bits (94), Expect = 2e-14
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
||| |||||||||| |||| |||||| |||||||||||||| | | ||||||||
Sbjct 2376313 AACCATAACTGATTGAATGGGCCATTTGCAGTTTCACTGTAACACCCGTGTGTACTTAGA 2376372
Query 461 CATGCATGGCTTAATCTTTGAGACA 485
||||||||||| ||||||||||||
Sbjct 2376373 TATGCATGGCTTCATCTTTGAGACA 2376397
>seq16
Length=9143828
Score = 80.6 bits (88), Expect = 8e-13
Identities = 97/132 (73%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154
|||||| |||||| |||||| | || ||||||||||||| || || ||| |||||||
Sbjct 7854251 TGCCTTTCTTGGAAGTGGTAATCATTCGTCAGGCTCCCTCTTTGGTATTGAATCCTAATT 7854310
Query 155 CCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214
| | |||||| | | ||||| | ||| || | |||| ||||||| || ||| |
Sbjct 7854311 CTTCATTACCCATGGTCACCATAGAAGGTGCATAAAGTGCCATTGAAAGTTTATGGGGTA 7854370
Query 215 GAAATTTGAATG 226
|| |||||| ||
Sbjct 7854371 GATATTTGACTG 7854382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510302473472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |