Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq151969 174 2e-41 seq284373 159 5e-37 seq285624 98.7 1e-18 seq284638 82.4 1e-13 >seq151969 Length=372 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| | Sbjct 37 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 94 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 95 CTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGGGTT 154 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| |||||||||| ||| | | || || ||| | |||||||||||||||| Sbjct 155 AGCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTTAGTGTAGCGCGCGTGCA 214 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 215 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 267 >seq284373 Length=2925531 Score = 159 bits (176), Expect = 5e-37 Identities = 181/235 (77%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| ||| || ||||| ||| |||||| |||||| | Sbjct 1243432 GTACAAAGGGCAGGGACTTAATCAACGTGAGTTT-ATGACCCGCACTTACTGGGAATT-C 1243489 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| ||||||||||||| ||||| || || Sbjct 1243490 CTCGTTCATGGTGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACAGGTT 1243549 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| |||||||||| ||| | | || | | || || |||||||||||| | ||| Sbjct 1243550 ACCCACACCTGTCGGCATAGGGTAGACACATGCT-AAGCCAGTCAGTGTAGCGCACATGC 1243608 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1243609 AGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 1243662 >seq285624 Length=9286383 Score = 98.7 bits (108), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 50 CTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT 109 ||| ||| ||| ||||| | | || ||||||||| | | || |||||||| Sbjct 25787 CTAAGAAGTTC-TCGTTCATGGGGAATAATTGCAATCCCCAACCCACATCACGAATGGGG 25845 Query 110 TTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTA 168 ||||| | ||||||| |||||| ||| ||| | | || || ||| |||||||| Sbjct 25846 TTCAACGGCTTACCCGCACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTA 25905 Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||| ||| |||| |||| ||||||||||||||||||||||||| |||| ||| Sbjct 25906 GCGCGCATGCAGCCCCAGACATGTAAGGGCATCACAGACCTGTTATTG-CTCAGACTCGG 25964 Query 229 GTGGCCTA 236 ||||| || Sbjct 25965 GTGGCATA 25972 >seq284638 Length=3112387 Score = 82.4 bits (90), Expect = 1e-13 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | || || |||||||||||||||||||||||| ||| Sbjct 1484926 TCAGTGTAGCGCGCGTGCAGCCCCGGACTTCCAAGGGCATCACAGACCTGTTATTG-CTC 1484868 Query 221 AAACT 225 || || Sbjct 1484867 AATCT 1484863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749911973300