Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq151969 174 2e-41
seq284373 159 5e-37
seq285624 98.7 1e-18
seq284638 82.4 1e-13
>seq151969
Length=372
Score = 174 bits (192), Expect = 2e-41
Identities = 182/234 (78%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| || ||||| ||||| ||| |||||| |||||| |
Sbjct 37 GTACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 94
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 95 CTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGGGTT 154
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
| ||| |||||||||| ||| | | || || ||| | ||||||||||||||||
Sbjct 155 AGCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTTAGTGTAGCGCGCGTGCA 214
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 215 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 267
>seq284373
Length=2925531
Score = 159 bits (176), Expect = 5e-37
Identities = 181/235 (77%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||||| ||| || ||||| ||| |||||| |||||| |
Sbjct 1243432 GTACAAAGGGCAGGGACTTAATCAACGTGAGTTT-ATGACCCGCACTTACTGGGAATT-C 1243489
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
|||||| | | || ||||||||| ||||||||||||| ||||| || ||
Sbjct 1243490 CTCGTTCATGGTGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACAGGTT 1243549
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178
|||| |||||||||| ||| | | || | | || || |||||||||||| | |||
Sbjct 1243550 ACCCACACCTGTCGGCATAGGGTAGACACATGCT-AAGCCAGTCAGTGTAGCGCACATGC 1243608
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1243609 AGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 1243662
>seq285624
Length=9286383
Score = 98.7 bits (108), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 50 CTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT 109
||| ||| ||| ||||| | | || ||||||||| | | || ||||||||
Sbjct 25787 CTAAGAAGTTC-TCGTTCATGGGGAATAATTGCAATCCCCAACCCACATCACGAATGGGG 25845
Query 110 TTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTA 168
||||| | ||||||| |||||| ||| ||| | | || || ||| ||||||||
Sbjct 25846 TTCAACGGCTTACCCGCACCTGTTGGCATAGGGTAGACACACGCTGAGCCAGTCAGTGTA 25905
Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||| ||| |||| |||| ||||||||||||||||||||||||| |||| |||
Sbjct 25906 GCGCGCATGCAGCCCCAGACATGTAAGGGCATCACAGACCTGTTATTG-CTCAGACTCGG 25964
Query 229 GTGGCCTA 236
||||| ||
Sbjct 25965 GTGGCATA 25972
>seq284638
Length=3112387
Score = 82.4 bits (90), Expect = 1e-13
Identities = 58/65 (89%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||||||||||| |||| | || || |||||||||||||||||||||||| |||
Sbjct 1484926 TCAGTGTAGCGCGCGTGCAGCCCCGGACTTCCAAGGGCATCACAGACCTGTTATTG-CTC 1484868
Query 221 AAACT 225
|| ||
Sbjct 1484867 AATCT 1484863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 749911973300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |