Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq284373 123 5e-26
seq283486 123 5e-26
seq58748 107 3e-21
seq285083 84.2 4e-14
seq284472 75.2 2e-11
>seq284373
Length=2925531
Score = 123 bits (136), Expect = 5e-26
Identities = 174/239 (73%), Gaps = 9/239 (4%)
Strand=Plus/Minus
Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAA 137
||| ||||||||| | |||||||||||| | || |||||| || |||||||
Sbjct 1244309 TTTTAAAAAATTAAAAATTTCAAAGCAGGCTGGTCATCAGAATACTCCAGATAGGAATAA 1244250
Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197
||||||||||| | |||||||||||||||||||| | || | | |||||||| | |
Sbjct 1244249 TAGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTTGAAACTGGGGCCATGATTAAGAAG 1244191
Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAA 254
||| | ||||| | ||||| || || |||||| |||||||||| | ||
Sbjct 1244190 GATGGCTGGGGGCATTCGTATTG---TGCCACTAGAGGTGGAATTCTTGGAATGGCGCAA 1244134
Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|| || | |||||||| || ||||| |||||||||||||||| |||||||| ||
Sbjct 1244133 GATGGACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAATT 1244076
>seq283486
Length=597801
Score = 123 bits (136), Expect = 5e-26
Identities = 176/241 (73%), Gaps = 5/241 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGG 132
|||| |||||||||||||| | |||||||||||| | |||| ||| || | ||| ||
Sbjct 302190 TTTATTTTGAAAAAATTAGTTT-TTCAAAGCAGGCTCGTTGCCGGAACACTTCAGCGAGG 302132
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192
|||||| ||||||||| | |||||||| |||| |||| || || | |||||||
Sbjct 302131 AATAATGGAATAGGAC-TCTAGTTCTATTGTGTTAGTTTTCAGAACTCGGGCCATGATTA 302073
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
| |||||| | ||||| | ||| || | |||| |||||| ||||||
Sbjct 302072 AGAGGGATGGCTGGGGGCATTCATATATGCTTCT-AGAGATGAAATCCTTGGACCAGCAC 302014
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|||| || | |||||||| || |||||| |||||||||||||||| ||| ||||||
Sbjct 302013 AAGATGGACCAAAGCGAAAGCATTTACCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 301955
Query 313 T 313
|
Sbjct 301954 T 301954
>seq58748
Length=228
Score = 107 bits (118), Expect = 3e-21
Identities = 124/163 (76%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| || | | | || | | | | | ||||||||||||||||||||||||
Sbjct 48 ATGCTCTTAACTGAGTATCCTGCGGGGTCCGAAGCATTTACTTTGAAAAAATTAGAGTGT 107
Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156
||||||||||| |||| |||||| ||| |||||||| ||||||||| | || |
Sbjct 108 TCAAAGCAGGCTGGTTGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCTGGCT 166
Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199
|||||||||| |||| | || | | |||||||| |||||
Sbjct 167 CTATTTTGTTAGTTTTCGGAACTGGGGCCATGATTAAGAGGGA 209
>seq285083
Length=8456797
Score = 84.2 bits (92), Expect = 4e-14
Identities = 80/99 (81%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGG 132
|||| |||||||||| ||| |||||||||||||| | | | |||||| ||| ||
Sbjct 6537169 TTTATTTTGAAAAAAATAG--TGTTCAAAGCAGGCTGATCCCCAGAATACTCCAGCTAGG 6537112
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171
|||||| |||||||| || |||||||||||||||||||
Sbjct 6537111 AATAATGGAATAGGA-GTCTGGTTCTATTTTGTTGGTTT 6537074
>seq284472
Length=2478567
Score = 75.2 bits (82), Expect = 2e-11
Identities = 75/96 (78%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176
|||||| ||| |||||||||||||||||| | ||||||||| |||||||||| | |
Sbjct 1435221 GAATACTCCAGCTAGGAATAATAGAATAGGAC-TCCGGTTCTATATTGTTGGTTTTTGGA 1435279
Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212
|| | | ||||||| ||||| || |||||| ||
Sbjct 1435280 ACTGGTGCCATGATTACGAGGGACAGCCGGGGGCGT 1435315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 912576853760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |