Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq284373 123 5e-26 seq283486 123 5e-26 seq58748 107 3e-21 seq285083 84.2 4e-14 seq284472 75.2 2e-11 >seq284373 Length=2925531 Score = 123 bits (136), Expect = 5e-26 Identities = 174/239 (73%), Gaps = 9/239 (4%) Strand=Plus/Minus Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAA 137 ||| ||||||||| | |||||||||||| | || |||||| || ||||||| Sbjct 1244309 TTTTAAAAAATTAAAAATTTCAAAGCAGGCTGGTCATCAGAATACTCCAGATAGGAATAA 1244250 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||| | || | | |||||||| | | Sbjct 1244249 TAGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTTGAAACTGGGGCCATGATTAAGAAG 1244191 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAA 254 ||| | ||||| | ||||| || || |||||| |||||||||| | || Sbjct 1244190 GATGGCTGGGGGCATTCGTATTG---TGCCACTAGAGGTGGAATTCTTGGAATGGCGCAA 1244134 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || | |||||||| || ||||| |||||||||||||||| |||||||| || Sbjct 1244133 GATGGACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAATT 1244076 >seq283486 Length=597801 Score = 123 bits (136), Expect = 5e-26 Identities = 176/241 (73%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGG 132 |||| |||||||||||||| | |||||||||||| | |||| ||| || | ||| || Sbjct 302190 TTTATTTTGAAAAAATTAGTTT-TTCAAAGCAGGCTCGTTGCCGGAACACTTCAGCGAGG 302132 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | |||||||| |||| |||| || || | ||||||| Sbjct 302131 AATAATGGAATAGGAC-TCTAGTTCTATTGTGTTAGTTTTCAGAACTCGGGCCATGATTA 302073 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | |||||| | ||||| | ||| || | |||| |||||| |||||| Sbjct 302072 AGAGGGATGGCTGGGGGCATTCATATATGCTTCT-AGAGATGAAATCCTTGGACCAGCAC 302014 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| || | |||||||| || |||||| |||||||||||||||| ||| |||||| Sbjct 302013 AAGATGGACCAAAGCGAAAGCATTTACCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 301955 Query 313 T 313 | Sbjct 301954 T 301954 >seq58748 Length=228 Score = 107 bits (118), Expect = 3e-21 Identities = 124/163 (76%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| || | | | || | | | | | |||||||||||||||||||||||| Sbjct 48 ATGCTCTTAACTGAGTATCCTGCGGGGTCCGAAGCATTTACTTTGAAAAAATTAGAGTGT 107 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| |||| |||||| ||| |||||||| ||||||||| | || | Sbjct 108 TCAAAGCAGGCTGGTTGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCTGGCT 166 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||||||| |||| | || | | |||||||| ||||| Sbjct 167 CTATTTTGTTAGTTTTCGGAACTGGGGCCATGATTAAGAGGGA 209 >seq285083 Length=8456797 Score = 84.2 bits (92), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGG 132 |||| |||||||||| ||| |||||||||||||| | | | |||||| ||| || Sbjct 6537169 TTTATTTTGAAAAAAATAG--TGTTCAAAGCAGGCTGATCCCCAGAATACTCCAGCTAGG 6537112 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||| |||||||| || ||||||||||||||||||| Sbjct 6537111 AATAATGGAATAGGA-GTCTGGTTCTATTTTGTTGGTTT 6537074 >seq284472 Length=2478567 Score = 75.2 bits (82), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||| ||| |||||||||||||||||| | ||||||||| |||||||||| | | Sbjct 1435221 GAATACTCCAGCTAGGAATAATAGAATAGGAC-TCCGGTTCTATATTGTTGGTTTTTGGA 1435279 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 || | | ||||||| ||||| || |||||| || Sbjct 1435280 ACTGGTGCCATGATTACGAGGGACAGCCGGGGGCGT 1435315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912576853760