Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq285556 123 1e-25
seq284839 105 3e-20
seq284600 105 3e-20
seq283750 104 1e-19
seq285970 102 3e-19
seq285650 96.9 1e-17
seq285514 93.3 2e-16
seq285441 93.3 2e-16
seq284756 91.5 6e-16
seq283930 77.0 1e-11
>seq285556
Length=5572028
Score = 123 bits (136), Expect = 1e-25
Identities = 106/131 (81%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||||| || |||||||||||||||||||||||||||| |||| ||||
Sbjct 1844141 GAGCAGGAGCATATGTGCAAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 1844082
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||| ||||||||||||||| | ||| |||||| ||||||||| | | ||| ||
Sbjct 1844081 CCAGAGCAAACTCTGGTGGAGGTCCATAGCAGTTCTGACGTGCAAATTGGTTGTCCGATC 1844022
Query 669 TGGGTATAGGG 679
||||||| |||
Sbjct 1844021 TGGGTATGGGG 1844011
>seq284839
Length=4167973
Score = 105 bits (116), Expect = 3e-20
Identities = 100/127 (79%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 3769422 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3769363
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 3769362 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTG--A 3769305
Query 160 AGAGAGT 166
|||||||
Sbjct 3769304 AGAGAGT 3769298
>seq284600
Length=7302563
Score = 105 bits (116), Expect = 3e-20
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || || |||||| | | ||||| |||||||
Sbjct 4125114 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 4125173
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||| ||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 4125174 ACCGGCACGAGACTGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 4125233
Query 160 AGAGAGTTAAA 170
|||||||||||
Sbjct 4125234 AGAGAGTTAAA 4125244
Score = 95.1 bits (104), Expect = 5e-17
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | |||| || || | ||||| |||||||||||||||||||||| |||| ||||
Sbjct 4124894 GAGCATGAGCGTAAGTGCTAGGACCGGAAAGATGGTGAACTATGCCTGTGCAGGGCGAAG 4124953
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||| |||| |||||| | | | ||| | ||||||||| || || |
Sbjct 4124954 CCAGAGGAAATTCTGATGGAGGTCCATAAGAGGCCTGACATGCAAATCGGTCATCCGACC 4125013
Query 669 TGGGTATAGGGGCGA 683
|||||||| ||| ||
Sbjct 4125014 TGGGTATAAGGGTGA 4125028
>seq283750
Length=9774
Score = 104 bits (114), Expect = 1e-19
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||||| || | |||||| ||||||||||||||| | || |||| ||||
Sbjct 8646 GAGCATGAGCATACGTGCTAGGACCCAAAAGATGGTGAACTAGGTCTTGGCAGGGCGAAG 8705
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
||||||||||| ||| |||||| || || ||| ||| ||||||||| | || | ||
Sbjct 8706 CCAGAGGAAACACTGATGGAGGTCCGTAGTGGTCCTGACGTGCAAATTGGTCATTCAACA 8765
Query 669 TGGGTATAGGGGCGA 683
|||| |||| |||||
Sbjct 8766 TGGGCATAGAGGCGA 8780
>seq285970
Length=338642
Score = 102 bits (112), Expect = 3e-19
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || ||| |||||| | | || || |||||||
Sbjct 209252 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGCGGTAAACTCCATCCAAGGCTAAAT 209311
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| |
Sbjct 209312 ACCGGCACGAGACCGATAGTCAACAAGTACTGAAAGGGAAAGTTGAAAAGAACTTTGAAG 209371
Query 160 AGAGAGTTAAA 170
|||||||||||
Sbjct 209372 AGAGAGTTAAA 209382
>seq285650
Length=2898381
Score = 96.9 bits (106), Expect = 1e-17
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 290063 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAAGTCCATCTAAGGCTAAAT 290122
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| |||||||| || ||||||| | | ||||| ||||||| |||||| |
Sbjct 290123 ACCGGCACGAGACCGACAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 290182
Query 160 AGAGAGTTAAA 170
|||||||| ||
Sbjct 290183 AGAGAGTTCAA 290193
>seq285514
Length=2680515
Score = 93.3 bits (102), Expect = 2e-16
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| ||| || |||||| | | ||||| |||||||
Sbjct 634057 GAGTCGGGTTGCTTGGGAATGCAGCCAAAAACTGGTGGTAAACTCCATCTAAGGCTAAAT 633998
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG--G 157
| |||| |||||||| || | |||| | | ||||| ||||||| |||||| |
Sbjct 633997 ACTGGCACGAGACCGACAGTCAAAGAGTACCATAAGAGAAAGTTGAAAAGAACTTTGAAG 633938
Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182
| ||||| || || || |||||||
Sbjct 633937 AGAGAGAATTCAAGAGGGCGTGAAA 633913
>seq285441
Length=4619505
Score = 93.3 bits (102), Expect = 2e-16
Identities = 89/113 (79%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||| |||||||||||||||| |||| |||| ||||||||||||| ||||||||
Sbjct 797054 GGACCCAAAAGATGGTGAACTATTCCTGGGCAGGGCAAAGCCAGAGGAAA--CTGGTGGA 797111
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| | || ||| ||| ||||||||| | ||| | |||||||||||||
Sbjct 797112 GGTCCATAGTGGTCCTGATGTGCAAATCAGTTGTCCGACCTGGGTATAGGGGC 797164
>seq284756
Length=903802
Score = 91.5 bits (100), Expect = 6e-16
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 792325 GAGTCGTGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 792266
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| |||| ||||||||||| |||| || || | || | ||||| | |||||| |
Sbjct 792265 ACTGGCACGAGACCGATAGTCAACAAATACCGTAAAGCAAGGTTGAAACGAACTTTGAAG 792206
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||| || || || | |||||
Sbjct 792205 TGAGAATTCAAGAGGGCATGAAA 792183
>seq283930
Length=212238
Score = 77.0 bits (84), Expect = 1e-11
Identities = 94/127 (74%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || |||| || || | | ||||| |||||||
Sbjct 123267 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGCCAACTCCATCTAAGGCTAAAT 123208
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA- 158
| | | ||||| |||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 123207 ACCGACACAAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAC 123148
Query 159 AAGAGAG 165
||||||
Sbjct 123147 CAGAGAG 123141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2073852001000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |