Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq285556 123 1e-25 seq284839 105 3e-20 seq284600 105 3e-20 seq283750 104 1e-19 seq285970 102 3e-19 seq285650 96.9 1e-17 seq285514 93.3 2e-16 seq285441 93.3 2e-16 seq284756 91.5 6e-16 seq283930 77.0 1e-11 >seq285556 Length=5572028 Score = 123 bits (136), Expect = 1e-25 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| || |||||||||||||||||||||||||||| |||| |||| Sbjct 1844141 GAGCAGGAGCATATGTGCAAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 1844082 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||| ||||||||||||||| | ||| |||||| ||||||||| | | ||| || Sbjct 1844081 CCAGAGCAAACTCTGGTGGAGGTCCATAGCAGTTCTGACGTGCAAATTGGTTGTCCGATC 1844022 Query 669 TGGGTATAGGG 679 ||||||| ||| Sbjct 1844021 TGGGTATGGGG 1844011 >seq284839 Length=4167973 Score = 105 bits (116), Expect = 3e-20 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3769422 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3769363 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 3769362 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTG--A 3769305 Query 160 AGAGAGT 166 ||||||| Sbjct 3769304 AGAGAGT 3769298 >seq284600 Length=7302563 Score = 105 bits (116), Expect = 3e-20 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 4125114 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 4125173 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 4125174 ACCGGCACGAGACTGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 4125233 Query 160 AGAGAGTTAAA 170 ||||||||||| Sbjct 4125234 AGAGAGTTAAA 4125244 Score = 95.1 bits (104), Expect = 5e-17 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || || | ||||| |||||||||||||||||||||| |||| |||| Sbjct 4124894 GAGCATGAGCGTAAGTGCTAGGACCGGAAAGATGGTGAACTATGCCTGTGCAGGGCGAAG 4124953 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||| |||| |||||| | | | ||| | ||||||||| || || | Sbjct 4124954 CCAGAGGAAATTCTGATGGAGGTCCATAAGAGGCCTGACATGCAAATCGGTCATCCGACC 4125013 Query 669 TGGGTATAGGGGCGA 683 |||||||| ||| || Sbjct 4125014 TGGGTATAAGGGTGA 4125028 >seq283750 Length=9774 Score = 104 bits (114), Expect = 1e-19 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| || | |||||| ||||||||||||||| | || |||| |||| Sbjct 8646 GAGCATGAGCATACGTGCTAGGACCCAAAAGATGGTGAACTAGGTCTTGGCAGGGCGAAG 8705 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||| ||| |||||| || || ||| ||| ||||||||| | || | || Sbjct 8706 CCAGAGGAAACACTGATGGAGGTCCGTAGTGGTCCTGACGTGCAAATTGGTCATTCAACA 8765 Query 669 TGGGTATAGGGGCGA 683 |||| |||| ||||| Sbjct 8766 TGGGCATAGAGGCGA 8780 >seq285970 Length=338642 Score = 102 bits (112), Expect = 3e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 209252 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGCGGGCGGTAAACTCCATCCAAGGCTAAAT 209311 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 209312 ACCGGCACGAGACCGATAGTCAACAAGTACTGAAAGGGAAAGTTGAAAAGAACTTTGAAG 209371 Query 160 AGAGAGTTAAA 170 ||||||||||| Sbjct 209372 AGAGAGTTAAA 209382 >seq285650 Length=2898381 Score = 96.9 bits (106), Expect = 1e-17 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 290063 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAAGTCCATCTAAGGCTAAAT 290122 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||| || ||||||| | | ||||| ||||||| |||||| | Sbjct 290123 ACCGGCACGAGACCGACAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 290182 Query 160 AGAGAGTTAAA 170 |||||||| || Sbjct 290183 AGAGAGTTCAA 290193 >seq285514 Length=2680515 Score = 93.3 bits (102), Expect = 2e-16 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| ||| || |||||| | | ||||| ||||||| Sbjct 634057 GAGTCGGGTTGCTTGGGAATGCAGCCAAAAACTGGTGGTAAACTCCATCTAAGGCTAAAT 633998 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG--G 157 | |||| |||||||| || | |||| | | ||||| ||||||| |||||| | Sbjct 633997 ACTGGCACGAGACCGACAGTCAAAGAGTACCATAAGAGAAAGTTGAAAAGAACTTTGAAG 633938 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | ||||| || || || ||||||| Sbjct 633937 AGAGAGAATTCAAGAGGGCGTGAAA 633913 >seq285441 Length=4619505 Score = 93.3 bits (102), Expect = 2e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| |||||||||||||||| |||| |||| ||||||||||||| |||||||| Sbjct 797054 GGACCCAAAAGATGGTGAACTATTCCTGGGCAGGGCAAAGCCAGAGGAAA--CTGGTGGA 797111 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | || ||| ||| ||||||||| | ||| | ||||||||||||| Sbjct 797112 GGTCCATAGTGGTCCTGATGTGCAAATCAGTTGTCCGACCTGGGTATAGGGGC 797164 >seq284756 Length=903802 Score = 91.5 bits (100), Expect = 6e-16 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 792325 GAGTCGTGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 792266 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| |||| || || | || | ||||| | |||||| | Sbjct 792265 ACTGGCACGAGACCGATAGTCAACAAATACCGTAAAGCAAGGTTGAAACGAACTTTGAAG 792206 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||| || || || | ||||| Sbjct 792205 TGAGAATTCAAGAGGGCATGAAA 792183 >seq283930 Length=212238 Score = 77.0 bits (84), Expect = 1e-11 Identities = 94/127 (74%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || |||| || || | | ||||| ||||||| Sbjct 123267 GAGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGCCAACTCCATCTAAGGCTAAAT 123208 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA- 158 | | | ||||| |||| ||||||| || | ||||| ||||||| |||||| | Sbjct 123207 ACCGACACAAGACCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAC 123148 Query 159 AAGAGAG 165 |||||| Sbjct 123147 CAGAGAG 123141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073852001000