Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq285514 125 3e-27 seq285833 114 6e-24 seq31212 107 9e-22 seq77636 105 3e-21 >seq285514 Length=2680515 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||| ||| || ||||||||||||||||||| || | Sbjct 634279 GGAAAAGAAACTAACCAGGATTCCCTCATTAATGGTGAGTGAACAGGGAAGAGCCTAGTG 634220 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||| | ||| | |||||| |||||| ||||||| || Sbjct 634219 CCAAATCCCTGTCCCACAGTGGGGTGCGGGAAATGTGGCATA 634178 >seq285833 Length=1095036 Score = 114 bits (126), Expect = 6e-24 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 600217 GGAAAAGAAACTAACCAGGATTCCCTCAGCAACGGTGAGTGAACAGAGACGAGCCCAGCG 600276 Query 61 CCGAATCCCCGCCCCG 76 ||||||||||| |||| Sbjct 600277 CCGAATCCCCGTCCCG 600292 >seq31212 Length=210 Score = 107 bits (118), Expect = 9e-22 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 210 >seq77636 Length=249 Score = 105 bits (116), Expect = 3e-21 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 18 GGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGC 77 || ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 175 GGTTTCCCTCAGTAACGGCGAGCGAACAGGGAAGAGCCCAGCGCCGAATCCCCATCCCGC 234 Query 78 GGTGGGGC 85 |||||||| Sbjct 235 GGTGGGGC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229780900800