Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq284373 241 2e-61
seq284638 205 1e-50
seq282434 170 3e-40
seq265194 161 2e-37
seq252480 152 8e-35
seq246386 143 4e-32
seq151969 136 6e-30
seq284389 113 7e-23
seq282813 111 3e-22
seq283783 104 4e-20
seq284600 98.7 2e-18
seq285624 80.6 4e-13
seq283604 75.2 2e-11
>seq284373
Length=2925531
Score = 241 bits (266), Expect = 2e-61
Identities = 205/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 1243590 GTCAGTGTAGCGCACATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1243648
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133
||| || | |||||| | |||| | |||||||||||||| | | || ||| | |
Sbjct 1243649 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 1243707
Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| | | | ||| |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1243708 GGGTCGTGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 1243767
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||
Sbjct 1243768 TCACTCCACCAACTAAGAATGGTCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 1243827
Query 251 AATCTGTC 258
||||||||
Sbjct 1243828 AATCTGTC 1243835
>seq284638
Length=3112387
Score = 205 bits (226), Expect = 1e-50
Identities = 198/248 (80%), Gaps = 11/248 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | || || ||||||||||||||||||||||||| |
Sbjct 1484927 GTCAGTGTAGCGCGCGTGCAGCCCCGGACTTCCAAGGGCATCACAGACCTGTTATTGC-T 1484869
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133
||| || | ||||| || | |||||||||||||| | | || |||| | |
Sbjct 1484868 CAATCT-CGGGGGGCTG-AACATACCTGTCCCTCTAAGAAGTTGGACGCCGACCACTCGG 1484811
Query 134 CGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| | | | || |||||| | | |||||||||||||||||||| |||||||||||
Sbjct 1484810 GGCTCGCGTAAGTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATGAACCAGACAAA 1484751
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
|| ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1484750 TCGCTCCACCAA----GAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 1484695
Query 251 AATCTGTC 258
||||||||
Sbjct 1484694 AATCTGTC 1484687
>seq282434
Length=536153
Score = 170 bits (188), Expect = 3e-40
Identities = 108/117 (92%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 114017 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCTCTCCACCA 114076
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 114077 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 114133
>seq265194
Length=496
Score = 161 bits (178), Expect = 2e-37
Identities = 106/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 13 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 72
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 73 ACTAAGAACGGTCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 129
>seq252480
Length=3876
Score = 152 bits (168), Expect = 8e-35
Identities = 104/117 (89%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 2934 CTAGTTAGCATGCCACAGTCTCGTTTGTTATTGGAATTAACCAGACAAATCGCTCCACCA 2993
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 2994 ACTAAGAATGGCCATGCACCACCGCCCACAGAATCAAGAAAGAGCTATCAATCTATC 3050
>seq246386
Length=432
Score = 143 bits (158), Expect = 4e-32
Identities = 149/191 (78%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 59 AGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118
|||||||||||||| |||| ||| | | ||| | |||| | ||||||||||||||
Sbjct 244 AGACCTGTTATTGC-TCAATCTTGGGT-GACTGAATGCCATTTGTCCCTCTAAGAAGTTG 301
Query 119 GCCACCAACCA-TAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174
| || |||| | | | | | |||||||||| | | |||| |||| ||||||
Sbjct 302 GATGCCGACCACTCAAGGGTCGCGTAACTATTTAGCATGCCAGAGTCTTGTTCATTATCG 361
Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234
||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 362 GAATTTACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCATTCACAGAA 421
Query 235 TCAAGAAAGAG 245
|||| ||||||
Sbjct 422 TCAAAAAAGAG 432
>seq151969
Length=372
Score = 136 bits (150), Expect = 6e-30
Identities = 141/180 (78%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|| |||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 195 GTTAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 253
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAG 132
||| | || |||||| | |||| | |||||||||||||| | | | || | ||
Sbjct 254 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCTGACTGCTCAG 312
Query 133 TCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| | | ||| |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 313 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 372
>seq284389
Length=12308914
Score = 113 bits (124), Expect = 7e-23
Identities = 74/82 (90%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
|||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 4349052 TCTCATTCGTTATCGGAATTAACCAGACATATCACTCCACCAACTAAGAACATCCATGCA 4348993
Query 220 CCACCACCCATAGAATCAAGAA 241
||||||||| ||||| ||||
Sbjct 4348992 TCACCACCCACAGAATTGAGAA 4348971
>seq282813
Length=5152230
Score = 111 bits (122), Expect = 3e-22
Identities = 61/61 (100%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080367 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 2080308
Query 219 A 219
|
Sbjct 2080307 A 2080307
Score = 78.8 bits (86), Expect = 1e-12
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
||| |||||| | | | |||| |||| ||||| |||||||||||||||| |||||||
Sbjct 4330677 CTAGTTAGCATGCCAGAAGTCTTGTTCATTATCAAAATTAACCAGACAAATTGCTCCACC 4330618
Query 201 AACTAAGAACGGCCATGC 218
||||||||| ||||||||
Sbjct 4330617 AACTAAGAATGGCCATGC 4330600
>seq283783
Length=2991296
Score = 104 bits (114), Expect = 4e-20
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206
||||| || | | || ||||| | || |||||||||| || | |||||||||| ||||
Sbjct 428878 TAGCATGTCCAAGACTTGTTCGCTCTCAGAATTAACCACACCACTCACTCCACCTACTAT 428937
Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||| |||| |||||| || ||| | ||||||| ||||||||||||||||||
Sbjct 428938 GAAGAGCCAGGCACCAGCATCCACAAAATCAAGGAAGAGCTATCAATCTGTC 428989
>seq284600
Length=7302563
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| || | |||||||||||||| |||||||||||||||||| |||||||
Sbjct 3827700 CTAGTTAGCATGTCAGAGTCTCGTTCGTTATTGGAATTAACCAGACAAATTGTTCCACCA 3827759
Query 202 ACTAAGAACGGCCATGC 218
|||||||||||||||||
Sbjct 3827760 ACTAAGAACGGCCATGC 3827776
>seq285624
Length=9286383
Score = 80.6 bits (88), Expect = 4e-13
Identities = 58/66 (88%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct 25897 GTCAGTGTAGCGCGCATGCAGCCCCAGACATGTAAGGGCATCACAGACCTGTTATTG-CT 25955
Query 75 CAAACT 80
|| |||
Sbjct 25956 CAGACT 25961
>seq283604
Length=971153
Score = 75.2 bits (82), Expect = 2e-11
Identities = 126/178 (71%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85
||| |||| |||| |||||| |||| ||||||||||||||| || |||| || |||
Sbjct 582811 GCGTGTGCAGCCCTAGACATCTGAGGGAATCACAGACCTGTTACTG-CTCAGTCTCCCA- 582868
Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAGTCGATG--GGG 141
|||||| | ||| | ||||| |||||| | |||||| | | | | ||
Sbjct 582869 TGGCTGAATGCCTCATGGCCCTCCAAGAAGTTGGATACCAACTGCTTGGGAGTTGCATAA 582928
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199
||| |||||| | | ||||| || |||||| |||| |||||| |||| | | ||||
Sbjct 582929 CTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATGAACCAGGCAAACCGCGCCAC 582986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794587580220
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