Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq284373 241 2e-61 seq284638 205 1e-50 seq282434 170 3e-40 seq265194 161 2e-37 seq252480 152 8e-35 seq246386 143 4e-32 seq151969 136 6e-30 seq284389 113 7e-23 seq282813 111 3e-22 seq283783 104 4e-20 seq284600 98.7 2e-18 seq285624 80.6 4e-13 seq283604 75.2 2e-11 >seq284373 Length=2925531 Score = 241 bits (266), Expect = 2e-61 Identities = 205/248 (83%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||| | Sbjct 1243590 GTCAGTGTAGCGCACATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1243648 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 1243649 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 1243707 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 1243708 GGGTCGTGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 1243767 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||| Sbjct 1243768 TCACTCCACCAACTAAGAATGGTCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 1243827 Query 251 AATCTGTC 258 |||||||| Sbjct 1243828 AATCTGTC 1243835 >seq284638 Length=3112387 Score = 205 bits (226), Expect = 1e-50 Identities = 198/248 (80%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | || || ||||||||||||||||||||||||| | Sbjct 1484927 GTCAGTGTAGCGCGCGTGCAGCCCCGGACTTCCAAGGGCATCACAGACCTGTTATTGC-T 1484869 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| || | ||||| || | |||||||||||||| | | || |||| | | Sbjct 1484868 CAATCT-CGGGGGGCTG-AACATACCTGTCCCTCTAAGAAGTTGGACGCCGACCACTCGG 1484811 Query 134 CGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | || |||||| | | |||||||||||||||||||| ||||||||||| Sbjct 1484810 GGCTCGCGTAAGTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATGAACCAGACAAA 1484751 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 1484750 TCGCTCCACCAA----GAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 1484695 Query 251 AATCTGTC 258 |||||||| Sbjct 1484694 AATCTGTC 1484687 >seq282434 Length=536153 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 114017 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCTCTCCACCA 114076 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 114077 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 114133 >seq265194 Length=496 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||||||||| |||||||||||||||||| |||||||| Sbjct 13 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCGCTCCACCA 72 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 73 ACTAAGAACGGTCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 129 >seq252480 Length=3876 Score = 152 bits (168), Expect = 8e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||| ||||| ||||||||||||||||||| |||||||| Sbjct 2934 CTAGTTAGCATGCCACAGTCTCGTTTGTTATTGGAATTAACCAGACAAATCGCTCCACCA 2993 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||||||||||||| |||| ||||||||||||||||||||||||| || Sbjct 2994 ACTAAGAATGGCCATGCACCACCGCCCACAGAATCAAGAAAGAGCTATCAATCTATC 3050 >seq246386 Length=432 Score = 143 bits (158), Expect = 4e-32 Identities = 149/191 (78%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 59 AGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 |||||||||||||| |||| ||| | | ||| | |||| | |||||||||||||| Sbjct 244 AGACCTGTTATTGC-TCAATCTTGGGT-GACTGAATGCCATTTGTCCCTCTAAGAAGTTG 301 Query 119 GCCACCAACCA-TAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 | || |||| | | | | | |||||||||| | | |||| |||| |||||| Sbjct 302 GATGCCGACCACTCAAGGGTCGCGTAACTATTTAGCATGCCAGAGTCTTGTTCATTATCG 361 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||||| |||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct 362 GAATTTACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCATTCACAGAA 421 Query 235 TCAAGAAAGAG 245 |||| |||||| Sbjct 422 TCAAAAAAGAG 432 >seq151969 Length=372 Score = 136 bits (150), Expect = 6e-30 Identities = 141/180 (78%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || |||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 195 GTTAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 253 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAG 132 ||| | || |||||| | |||| | |||||||||||||| | | | || | || Sbjct 254 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCTGACTGCTCAG 312 Query 133 TCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 313 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 372 >seq284389 Length=12308914 Score = 113 bits (124), Expect = 7e-23 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 4349052 TCTCATTCGTTATCGGAATTAACCAGACATATCACTCCACCAACTAAGAACATCCATGCA 4348993 Query 220 CCACCACCCATAGAATCAAGAA 241 ||||||||| ||||| |||| Sbjct 4348992 TCACCACCCACAGAATTGAGAA 4348971 >seq282813 Length=5152230 Score = 111 bits (122), Expect = 3e-22 Identities = 61/61 (100%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2080367 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 2080308 Query 219 A 219 | Sbjct 2080307 A 2080307 Score = 78.8 bits (86), Expect = 1e-12 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||| |||||| | | | |||| |||| ||||| |||||||||||||||| ||||||| Sbjct 4330677 CTAGTTAGCATGCCAGAAGTCTTGTTCATTATCAAAATTAACCAGACAAATTGCTCCACC 4330618 Query 201 AACTAAGAACGGCCATGC 218 ||||||||| |||||||| Sbjct 4330617 AACTAAGAATGGCCATGC 4330600 >seq283783 Length=2991296 Score = 104 bits (114), Expect = 4e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||| || | | || ||||| | || |||||||||| || | |||||||||| |||| Sbjct 428878 TAGCATGTCCAAGACTTGTTCGCTCTCAGAATTAACCACACCACTCACTCCACCTACTAT 428937 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||| |||||| || ||| | ||||||| |||||||||||||||||| Sbjct 428938 GAAGAGCCAGGCACCAGCATCCACAAAATCAAGGAAGAGCTATCAATCTGTC 428989 >seq284600 Length=7302563 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| || | |||||||||||||| |||||||||||||||||| ||||||| Sbjct 3827700 CTAGTTAGCATGTCAGAGTCTCGTTCGTTATTGGAATTAACCAGACAAATTGTTCCACCA 3827759 Query 202 ACTAAGAACGGCCATGC 218 ||||||||||||||||| Sbjct 3827760 ACTAAGAACGGCCATGC 3827776 >seq285624 Length=9286383 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||| || Sbjct 25897 GTCAGTGTAGCGCGCATGCAGCCCCAGACATGTAAGGGCATCACAGACCTGTTATTG-CT 25955 Query 75 CAAACT 80 || ||| Sbjct 25956 CAGACT 25961 >seq283604 Length=971153 Score = 75.2 bits (82), Expect = 2e-11 Identities = 126/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85 ||| |||| |||| |||||| |||| ||||||||||||||| || |||| || ||| Sbjct 582811 GCGTGTGCAGCCCTAGACATCTGAGGGAATCACAGACCTGTTACTG-CTCAGTCTCCCA- 582868 Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAGTCGATG--GGG 141 |||||| | ||| | ||||| |||||| | |||||| | | | | || Sbjct 582869 TGGCTGAATGCCTCATGGCCCTCCAAGAAGTTGGATACCAACTGCTTGGGAGTTGCATAA 582928 Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||| |||||| | | ||||| || |||||| |||| |||||| |||| | | |||| Sbjct 582929 CTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATGAACCAGGCAAACCGCGCCAC 582986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794587580220