Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq283078 316 3e-84 seq282887 288 2e-75 seq228378 288 2e-75 seq275009 215 9e-54 seq286361 199 7e-49 seq283852 187 4e-45 seq285415 159 6e-37 seq284791 156 7e-36 seq262662 156 7e-36 seq285118 147 4e-33 seq284067 118 2e-24 seq286126 114 2e-23 seq286094 96.9 6e-18 seq284308 91.5 3e-16 seq8427 82.4 1e-13 seq186423 78.8 2e-12 >seq283078 Length=80167 Score = 316 bits (350), Expect = 3e-84 Identities = 248/295 (84%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 10512 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 10571 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||||| |||||||| |||||| ||||||||||||||||||||||||||||| ||| | Sbjct 10572 ATGACGATCTAAACCTAGCTCAAGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTG 10631 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 10632 AATTCTGCTTCACAATGATAGGAAGAGCCGACACTGAAGGATCAAAAAGCGACGTCGCTA 10691 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| | |||| || Sbjct 10692 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACCCCTCCTGCT 10751 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 10752 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 10806 >seq282887 Length=3162564 Score = 288 bits (318), Expect = 2e-75 Identities = 182/197 (92%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 || |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 2750121 GTTATCAGTCGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCCAGCTCACGTTCCCT 2750062 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||| |||| |||||||||||| |||||||||||||||| Sbjct 2750061 GTTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 2750002 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2750001 ACATTGAAGGATCAAAAAGCAACATCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 2749942 Query 210 CCTGTGGTAACTTTTCT 226 ||| ||||||||||||| Sbjct 2749941 CCTATGGTAACTTTTCT 2749925 >seq228378 Length=797 Score = 288 bits (318), Expect = 2e-75 Identities = 224/265 (85%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 361 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACCGTCTAAACCCAGCTCGCGTTCCCTA 420 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| |||||||||||||||||||| |||||||||||| |||||||||||||| || Sbjct 421 TTAGCGGGTGAACAATCCAACGCTTGGGGAATTCTGCTTCACAATGATAGGAAGAGCTGA 480 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| Sbjct 481 CATTGAAGGATCAAAAAGCAACGTCACTATGAACGCTTGGCCGCCACAAGCCAGTCATCC 540 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 | |||||||||| || |||||| | | ||| | | | | |||||| | ||| Sbjct 541 CCCTGGTAACTTT--TGACACCTCCTGGGTAAAACCCCCAAAGTCAGAAGGATTGTGAGG 598 Query 271 -CCACACTTTCATGGTTTGTATTCA 294 || | |||||| ||| |||||||| Sbjct 599 CCCCCGCTTTCACGGTCTGTATTCA 623 >seq275009 Length=6411 Score = 215 bits (238), Expect = 9e-54 Identities = 170/203 (84%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT--TCCCTAT 91 ||||||||||||||||||||||||||| | ||||||| || |||||| | || || | Sbjct 4545 TCAGTAGGGTAAAACTAACCTGTCTCACCATGGTCTAACCCTAGCTCATGCACTCTCTCT 4486 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||| ||||| |||||||| ||| ||||||||||||| ||| Sbjct 4485 TAGTGGGTGAACAATCCAGCGCTTGGTGAATTCTGTTTCCCAATGATAGGAAGAGGTGAC 4426 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||||| |||||||||| |||||||||| | | | || |||||||||||||||||| Sbjct 4425 ATTAAAGGACCAAAAAGCAATGTCGCTATGATCACGTAGCCACCACAAGCCAGTTATCCC 4366 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||| |||||| Sbjct 4365 CGTGGTAACTTTTCTGACACCTC 4343 >seq286361 Length=3935254 Score = 199 bits (220), Expect = 7e-49 Identities = 190/242 (79%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 || ||||| ||||||||| ||||| | |||||||||| ||||||||| |||||| Sbjct 2729197 CTATCTCACGACGGTCTAGCCCCAGTGGTCTAGCCCTATTAGTAGGTGAACAACCCAACG 2729138 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| |||||||||||| ||||||||||||||||||| | |||||| ||||||||| Sbjct 2729137 CTTGGTGAATTCTGCTTCATAATGATAGGAAGAGCCGACACTGCAGGATC-AAAAGCAAC 2729079 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 2729078 GTCGCTATGAATCGTTGGCTGCCACAAGCCAGTTATCTCTCTGGTAACTTTTCTGACACC 2729019 Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || || | ||| | | | || |||| ||||| | ||||| | || |||||| Sbjct 2729018 TCCTGCTTAAAACCCAAAAAGTCAGAAAGATCATGAGGCCCCGCTTTCCTAGTCTGTATT 2728959 Query 293 CA 294 || Sbjct 2728958 CA 2728957 >seq283852 Length=5495975 Score = 187 bits (206), Expect = 4e-45 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1713811 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 1713752 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||| ||||||||||||||||||||||||||||||||| || || || || Sbjct 1713751 ATGAACGCTTGGTTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTTTGACAATTCCTGC 1713692 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 1713691 TTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 1713636 >seq285415 Length=1572009 Score = 159 bits (176), Expect = 6e-37 Identities = 141/175 (81%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| Sbjct 563210 GAATTCTGCTTCATGATGATAGGAAGAGCGGACATTGAAGGATCAAAAAGTGACATCGCT 563269 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTAT-CCCTGTGGTAACTTTTCTGGCACCTCTAG 237 ||||||| ||||| ||||||||||||||| |||| |||||||| ||||| |||||| | Sbjct 563270 ATGAACGGTTGGCCACCACAAGCCAGTTATCCCCTCTGGTAACTATTCTGACACCTCCTG 563329 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | | |||| | | | |||||||| ||||| |||||||| || |||||| Sbjct 563330 CTTAAAATCCAAAAAGTCAGAAGGATCGTGAGGCCCCACTTTCACAGTCTGTATT 563384 >seq284791 Length=1530781 Score = 156 bits (172), Expect = 7e-36 Identities = 142/178 (80%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTA--GTGGGTGAACAATCCAACGCTTA 116 ||||| || |||||||||| ||| ||||||| ||| |||| || ||| ||| |||| Sbjct 1341721 CATGATGGGCTAAACCCAGGTCATGTTCCCTTTTACTGTGGACAAATAATGCAATGCTTG 1341780 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 ||||| |||||| || ||||||||||| ||||||||||||||||| || || | | Sbjct 1341781 ATGAATTTTGCTTCACAGTGTTAGGAAGAGCCAACATCGAAGGATCAAAATGCCACATTG 1341840 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||||| ||| |||||||||||| ||||||||| |||||||||| |||||| Sbjct 1341841 CTATGAACGGCTGGTCTCCACAAGCCAGTCATCCCTGTGAAAACTTTTCTGACACCTC 1341898 >seq262662 Length=473 Score = 156 bits (172), Expect = 7e-36 Identities = 104/116 (90%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||| |||||| |||||| |||||| ||||||| ||||| || Sbjct 391 GAATTCTGCTTCACAATGATAGAAAGAGCTGACATCAAAGGATGAAAAAGCGACGTCACT 332 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| Sbjct 331 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGCGGTAACTTTTCTGACATCTC 276 >seq285118 Length=5445708 Score = 147 bits (162), Expect = 4e-33 Identities = 119/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||| ||||||||||||||||||| Sbjct 170238 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAAGGTAAAACTAACCTGTCTC 170179 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | |||||||||||||||||| |||||| ||||||||||||||||||||||| | | Sbjct 170178 ACAATGGTCTAAACCCAGCTCACATTCCCTGTTAGTGGGTGAACAATCCAACGCCTGGTG 170119 Query 120 AATTCTGCTTCGGTATGATAGGA 142 ||||||||||| ||||||||| Sbjct 170118 AATTCTGCTTCACAATGATAGGA 170096 >seq284067 Length=5838343 Score = 118 bits (130), Expect = 2e-24 Identities = 185/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||| |||||||||||||||| | | |||| |||| ||| | ||||| Sbjct 3211729 TCATCAGTAGAGTAAAACTAACCTGTCCCCCGGTAGTCTGAACCTAGCCTGCAGTCCCTG 3211670 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||| || |||||||| || |||| | ||| ||| |||||||| || | Sbjct 3211669 ATAGTGGGTAAATAATCCAACAGTTGT--AATTTTTATTCACAATGTTAGGAAGAACCAA 3211612 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||| |||||| | || |||| ||| ||| ||||||||||||||| Sbjct 3211611 CACAGAAGGCTCAAAATACTGTGTTGCTAAGAATATGCGGCCAGCACAAGCCAGTTATCT 3211552 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||| |||| || |||| | || | |||| | | | ||| ||| | | Sbjct 3211551 CTGTGGTAATTTTTATGACACCCCCTGCTTGAAATCCCAGAAGTCAGAAGAATCATGAAG 3211492 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || ||||||| || |||||||| Sbjct 3211491 CCCTGCTTTCATAGTCTGTATTCA 3211468 >seq286126 Length=1737514 Score = 114 bits (126), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 || |||| |||| | || |||||| | || |||| ||||||| || || ||||| Sbjct 974307 GATTTACTATTGCAACAACAGTCATCCCTGGGAGAAAATAAACCTGTA-CAGGAAGGTCT 974365 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||| || || ||| |||| |||||||||||||| || | ||||||||| Sbjct 974366 AAACCCAGCTTACATTTCCTGTTAGCAGGTGAACAATCCAATAGTTGGCAAATTCTGCT- 974424 Query 130 CGGTATGATAGGAAGA---GCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 |||||||| |||| || |||| || ||| ||||||||| || |||| || || Sbjct 974425 --GTATGATAATAAGAACTGCTGACA--GAGATATCCAAAAGCAACATCACTATAAATGC 974480 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 || | |||||| ||| | ||||| ||| | | ||| ||| || Sbjct 974481 TTTGATGCCACCAGCTACTTATCTTTGTATTGATTTTGCTGACA 974524 >seq286094 Length=219808 Score = 96.9 bits (106), Expect = 6e-18 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 || ||||||| |||||||||||||||| |||| |||||||||| |||||||||||||| Sbjct 114360 ATAAAAAAGCGACGTCGCTATGAACGCGTGGC---CACAAGCCAGATATCCCTGTGGTAA 114304 Query 220 CTTTTCTGGCACCT 233 |||||||| ||||| Sbjct 114303 CTTTTCTGACACCT 114290 >seq284308 Length=5108049 Score = 91.5 bits (100), Expect = 3e-16 Identities = 103/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 |||| ||||| || |||||||||||||||| |||||||||||||||||| |||||| Sbjct 669122 CCTG-CTCATAACTATCTAAACCCAGCTCACCTTCCCTATTAGTGGGTGAGTAATCCAGT 669180 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 | | || |||||||| | |||||||| | || ||||| | |||||||| | Sbjct 669181 GACTGGTGACTTCTGCTTTGCATGGATAGGAAAAACC--TCTCGAATGGTCAAAAAGTGA 669238 Query 172 CGTCGCTATGAACGCT 187 | || ||||||| ||| Sbjct 669239 CATCACTATGAATGCT 669254 >seq8427 Length=2114 Score = 82.4 bits (90), Expect = 1e-13 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 |||||| ||| ||||||||||||| |||| ||||||||| | | ||| || || | Sbjct 1910 GGTCTAG-CCCGGCTCACGTTCCCT-TTAGAGGGTGAACAGCCTGATGCTCTGCGCATGC 1967 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 || || ||| ||||| ||| |||| | | ||| || | ||| || | ||||| Sbjct 1968 CGCCTCACGCTGACAGGAAAAGCTGACACCAAGGGACCAGACCCCAATGTTGTGATGAAT 2027 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||| ||||||||| |||| |||| ||||| || ||||| Sbjct 2028 GCTGGGCTGCCACCAGCCCGTTAACCCTGCAGTGACTTT 2066 >seq186423 Length=2878 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 8/142 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| || |||| ||||||| | || |||| |||||||||||||| Sbjct 2376 TCATCAGTAGGGTCAAGCTAATTTGTCTCACCAAAGTTGAAACTCAGCTCACGTTCCCAC 2317 Query 91 TTAGTGGGTGAACAATCCAACGCTT--ACCGA--ATTCTGCTTCGGTATGATAGGAAGAG 146 |||||| | |||||| || ||| | || |||| ||| | ||||||||||| Sbjct 2316 TTAGTGAGGGAACAAGCC----CTTCGATGGAGGGTTCTACTTTGTGATGATAGGAAGGA 2261 Query 147 CCGACATCGAAGGATCAAAAAG 168 |||| | |||||||||||| Sbjct 2260 CCGAAGCCAGAGGATCAAAAAG 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851951118720