Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq151969 78.8 6e-13 seq282829 71.6 8e-11 >seq151969 Length=372 Score = 78.8 bits (86), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 53 CTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| |||| Sbjct 1 CTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACTTAAT 58 Query 113 ACAACGCAAGCT 124 ||| ||||||| Sbjct 59 -CAATGCAAGCT 69 >seq282829 Length=767964 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| || |||||||| ||||||||||||||||||| Sbjct 726672 CTCACTAAACCATC-CAATCGGTAGTA-GCAACGGGCGGTGTGTACAAAGGGCAGGGACT 726615 Query 109 TAA 111 ||| Sbjct 726614 TAA 726612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299991731600