Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq151969 179 7e-43 seq284373 167 4e-39 seq285624 93.3 8e-17 seq284638 86.0 1e-14 >seq151969 Length=372 Score = 179 bits (198), Expect = 7e-43 Identities = 197/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 293 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 236 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||| || | || || || | Sbjct 235 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTAACTGGCTCAGCGTGTGTCTAC 176 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| || ||| | | || | | ||||| ||||||| | | |||| Sbjct 175 CCTACGCCGACAGGTGCGGCTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 116 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| || |||||| Sbjct 115 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCATTGATT 56 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 55 AAGTCCCTGCCCTTTGTA 38 >seq284373 Length=2925531 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1243688 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 1243631 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| ||| | ||||||||||||| | | | || | Sbjct 1243630 ATGCCCTTAGATGTCTGGGGCTGCATGTGCGCTACACTGACTGGCTTAGCATGTGTCTAC 1243571 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| ||||||| || | || | | ||||| ||||||| | |||| Sbjct 1243570 CCTATGCCGACAGGTGTGGGTAACCTGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 1243511 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | |||||||||| || |||||| ||| ||||| | | | |||||||| Sbjct 1243510 CAATTATTCACCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAACTCACGTTGATT 1243451 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1243450 AAGTCCCTGCCCTTTGTA 1243433 >seq285624 Length=9286383 Score = 93.3 bits (102), Expect = 8e-17 Identities = 121/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 ||| |||| ||||||||||||||||||||||||| |||| |||| ||| ||||||||| Sbjct 25961 AGTCTGAG-CAATAACAGGTCTGTGATGCCCTTACATGTCTGGGGCTGCATGCGCGCTAC 25903 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | ||| ||| |||| |||||| | | || | Sbjct 25902 ACTGACTGGCTCAGCGTGTGTCTACCCTATGCCAACAGGTGCGGGTAAGCCGTTGAACCC 25843 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 | ||||| || || | | | |||||||||||| | | | |||||| Sbjct 25842 CATTCGTGATGTGGGTTGGGGATTGCAATTATTCCCCATGAACGAG 25797 >seq284638 Length=3112387 Score = 86.0 bits (94), Expect = 1e-14 Identities = 83/103 (81%), Gaps = 8/103 (8%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGAC---TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||| ||| | ||| || | || ||||| |||||||||||||| Sbjct 1484830 CTTCTTAGAGGGACAGGTAT--GTTCAGCCCCCCG--AGATTGAG-CAATAACAGGTCTG 1484884 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||| || || | |||| ||||||||||||||||||| Sbjct 1484885 TGATGCCCTTGGAAGTCCGGGGCTGCACGCGCGCTACACTGAC 1484927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944485135360