Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq151969 179 7e-43
seq284373 167 4e-39
seq285624 93.3 8e-17
seq284638 86.0 1e-14
>seq151969
Length=372
Score = 179 bits (198), Expect = 7e-43
Identities = 197/258 (76%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 293 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 236
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||||||||| || | || || || |
Sbjct 235 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTAACTGGCTCAGCGTGTGTCTAC 176
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| || ||| | | || | | ||||| ||||||| | | ||||
Sbjct 175 CCTACGCCGACAGGTGCGGCTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 116
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| || ||||||
Sbjct 115 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCATTGATT 56
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 55 AAGTCCCTGCCCTTTGTA 38
>seq284373
Length=2925531
Score = 167 bits (184), Expect = 4e-39
Identities = 194/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 1243688 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 1243631
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| |||| ||| | ||||||||||||| | | | || |
Sbjct 1243630 ATGCCCTTAGATGTCTGGGGCTGCATGTGCGCTACACTGACTGGCTTAGCATGTGTCTAC 1243571
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| |||| ||||||| || | || | | ||||| ||||||| | ||||
Sbjct 1243570 CCTATGCCGACAGGTGTGGGTAACCTGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 1243511
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | |||||||||| || |||||| ||| ||||| | | | ||||||||
Sbjct 1243510 CAATTATTCACCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAACTCACGTTGATT 1243451
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1243450 AAGTCCCTGCCCTTTGTA 1243433
>seq285624
Length=9286383
Score = 93.3 bits (102), Expect = 8e-17
Identities = 121/166 (73%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
||| |||| ||||||||||||||||||||||||| |||| |||| ||| |||||||||
Sbjct 25961 AGTCTGAG-CAATAACAGGTCTGTGATGCCCTTACATGTCTGGGGCTGCATGCGCGCTAC 25903
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| | || || || | ||| ||| |||| |||||| | | || |
Sbjct 25902 ACTGACTGGCTCAGCGTGTGTCTACCCTATGCCAACAGGTGCGGGTAAGCCGTTGAACCC 25843
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271
| ||||| || || | | | |||||||||||| | | | ||||||
Sbjct 25842 CATTCGTGATGTGGGTTGGGGATTGCAATTATTCCCCATGAACGAG 25797
>seq284638
Length=3112387
Score = 86.0 bits (94), Expect = 1e-14
Identities = 83/103 (81%), Gaps = 8/103 (8%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGAC---TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
|||||||||||||| ||| | ||| || | || ||||| ||||||||||||||
Sbjct 1484830 CTTCTTAGAGGGACAGGTAT--GTTCAGCCCCCCG--AGATTGAG-CAATAACAGGTCTG 1484884
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||||| || || | |||| |||||||||||||||||||
Sbjct 1484885 TGATGCCCTTGGAAGTCCGGGGCTGCACGCGCGCTACACTGAC 1484927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944485135360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |