Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq283078 334 2e-89 seq285202 154 5e-35 seq245068 147 7e-33 seq283852 127 7e-27 seq216192 118 3e-24 seq284249 111 5e-22 seq4899 109 2e-21 seq285689 105 2e-20 seq286361 102 3e-19 seq282728 100 9e-19 seq59162 100 9e-19 seq122583 98.7 3e-18 seq94142 98.7 3e-18 seq285377 93.3 1e-16 seq285118 93.3 1e-16 seq285415 86.0 2e-14 seq282887 84.2 7e-14 seq138791 75.2 4e-11 >seq283078 Length=80167 Score = 334 bits (370), Expect = 2e-89 Identities = 340/439 (77%), Gaps = 13/439 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| | || | ||||||||||||||||||| Sbjct 10839 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTAAGCTCACCTTAGGACACCTGCGTTACA 10898 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA-TCAACCCGGAT 125 |||| |||| || ||||||||| ||||||||||| |||||| |||| | | || | Sbjct 10899 GTTTGACAGGTGCACCGCCCCAGTCAAACTCCCCATCTGACACTGTCCCTGGAGTGGGTT 10958 Query 126 CGGCCCGCGAAGGACC------TTAACGCCAGAAA--ATGGTCGGTGAAGACCAGTTCCG 177 ||||| | | || || ||||||| | | | | | | | | || Sbjct 10959 GTGCCCGGCATGCGCCGGGTGCTTGGAGCCAGAAGCGAGAGCCCCTCAGGGCTCGCCCCC 11018 Query 178 CT---TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 || ||| | ||||| |||||| ||||| |||||||||||||||| ||| || | Sbjct 11019 CTGCCTCACCGGGTAAGTGAAAAAATTATAAGAGTAGTGGTATTTCACTGGCGGCCCGGA 11078 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | |||||||||||||||||||||||| ||| |||||| | | |||| |||||||||| Sbjct 11079 GGCCTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTGGAGTCAAGCT 11138 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 11139 CAACAGGGACTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCAC 11198 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||||||||| ||||| |||||||| |||| || |||||||| | || ||||||||||| Sbjct 11199 TAGATAGTAGGTAGGGGCAGTGGGAGTCTCTTTCGTCCATTCACGTGCATCACTAATTAG 11258 Query 414 ATGACGAGGCATTTGGCTA 432 ||||| ||||||||||||| Sbjct 11259 ATGACTAGGCATTTGGCTA 11277 Score = 136 bits (150), Expect = 1e-29 Identities = 89/98 (91%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||||||||||||||||| || ||||||| | ||| ||||||||||||||||||| Sbjct 44749 TAAGAGAGTCATAGTTACTCCCACCATTTACCCACACTTCCTTGAATTTCTTCACTTTGA 44808 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||||||||||||||||||||||||| | ||||||| Sbjct 44809 CACTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 44846 >seq285202 Length=2628881 Score = 154 bits (170), Expect = 5e-35 Identities = 90/93 (97%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 997841 GGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGC 997782 Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | ||||||||||||||||||||||||||||||| Sbjct 997781 GTGTCACTAATTAGATGACGAGGCATTTGGCTA 997749 >seq245068 Length=973 Score = 147 bits (162), Expect = 7e-33 Identities = 92/99 (93%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 244 TTAAGAGAATCATAGTTACTCCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTTTG 185 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||| Sbjct 184 ACATTCAGAGCACTGGGCAGAAATCACATCAAGTCAACA 146 Score = 107 bits (118), Expect = 6e-21 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| |||||||||||||||||||||| |||||||||||| | |||||||||||| ||| Sbjct 866 AGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCACATCACTAATTAGACGAC 807 Query 419 GAGGCATTTGGCTA 432 ||||||||||||| Sbjct 806 TAGGCATTTGGCTA 793 >seq283852 Length=5495975 Score = 127 bits (140), Expect = 7e-27 Identities = 88/100 (88%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||| ||||||||| ||| |||||| | |||| ||||| |||||| |||| Sbjct 4415995 CTTAAGAGAGTCACAGTTACTCCTGCCATTTACCTGTGCTTCATTGAAATTCTTCGCTTT 4416054 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| |||| | ||||||| Sbjct 4416055 GACATTCAGAGCACTGGGCAGAAATTACATCGTGTCAACA 4416094 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| ||| | ||||||||||||||||||| | Sbjct 1713603 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAACTCGCCTTAGGACACCTGCGTTACG 1713544 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| |||||||| ||| ||||| |||| Sbjct 1713543 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCTCACTTGACACTGTC 1713497 Score = 111 bits (122), Expect = 5e-22 Identities = 197/279 (71%), Gaps = 15/279 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| | ||||| |||| |||| | ||||||||||||||| ||| Sbjct 165899 CTTCTGCTCCACCAGAGGTCTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACA 165958 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT-CATCAACCCG--- 122 |||| |||| ||| ||||||||| |||||||||||||||||| ||| | | | | | Sbjct 165959 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACACTGTCCCTGGAGCAGGTC 166018 Query 123 GATC--GGCCCGCG-AAGGACCTTAACGCCAGA---AAATGGTCGGTGAAGACCAGTTCC 176 | || ||| ||| ||| ||| |||||| || | | || | || || Sbjct 166019 GCTCCTGGCATGCGCCAGGCACTTGGAGCCAGAAGCAAGAGCCCCTTGGGGCTCACGCCC 166078 Query 177 --GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAA 233 || ||| | ||||| |||||| ||| | |||||||||||||||| || || | Sbjct 166079 TTGCCTCACCAAGTAAGTGAAAAAATGAT--GAGTAGTGGTATTTCACTGGCAACCTGGA 166136 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 | ||||||||||||||| |||||| ||| |||||| Sbjct 166137 GGCCTCCCACTTATTCTATGCCTCTCGTGTCTCTTCACA 166175 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||||||||||| ||||||||||| |||||||||||||||||| ||| ||||| Sbjct 4410988 GCTGTGGTTTCCCTAGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCA 4411039 >seq216192 Length=2024 Score = 118 bits (130), Expect = 3e-24 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||| |||||||||||| || |||||| || ||| ||||||||||||||||||||||||| Sbjct 2022 AGTTATAGTTACTCCCACCATTTACCTGCACTTCATTGAATTTCTTCACTTTGACATTCA 1963 Query 502 GAGCACTGGGCAGAAATCACATTGC 526 | ||||||||||||||||||||||| Sbjct 1962 GCGCACTGGGCAGAAATCACATTGC 1938 >seq284249 Length=2388267 Score = 111 bits (122), Expect = 5e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||| |||||| | || ||| ||| ||||||| | || ||||||||||||||||| Sbjct 1199762 TTAAGACAGTCATTGATATTCCTGCCATTTACCCACAATTCACTGAATTTCTTCACTTTG 1199703 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||| |||||||||||||||||||| ||||| Sbjct 1199702 ACATTCAGAGCTCTGGGCAGAAATCACATTGCAGCAACA 1199664 >seq4899 Length=2394 Score = 109 bits (120), Expect = 2e-21 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||||||||| |||||||||||||||||||| ||||||| || | |||||||||| Sbjct 765 GCTAGATAGTAGGCAGGGACAGTGGGAATCTCGTACATCCATTGATATGTGTCACTAATT 706 Query 412 AGATGACGAGGCATTTGGCTACCTT 436 | |||||||||||||||||||| || Sbjct 705 ATATGACGAGGCATTTGGCTACATT 681 >seq285689 Length=5814978 Score = 105 bits (116), Expect = 2e-20 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2519025 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCG 2519084 Query 385 T 385 | Sbjct 2519085 T 2519085 >seq286361 Length=3935254 Score = 102 bits (112), Expect = 3e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||||| || |||| ||||||| |||| |||| | || ||||||||||| |||| || Sbjct 2728923 TTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCATAGGACACCTGTGTTACGG 2728864 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||| |||| ||| || |||||| |||||||||||||||| Sbjct 2728863 TTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGA 2728825 >seq282728 Length=6258922 Score = 100 bits (110), Expect = 9e-19 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 |||| || ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| Sbjct 4779951 TGGTCTCACTAGATAGTAGGTAGGGACAATGGGAATCTCATTCATCCATTCAAGCGCGTC 4779892 Query 405 ACTAATTAGATGACGAGGCA 424 |||||||||||| || ||| Sbjct 4779891 ACTAATTAGATGCAGATGCA 4779872 >seq59162 Length=229 Score = 100 bits (110), Expect = 9e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 170 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 229 >seq122583 Length=383 Score = 98.7 bits (108), Expect = 3e-18 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 57 >seq94142 Length=276 Score = 98.7 bits (108), Expect = 3e-18 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 57 >seq285377 Length=1254272 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 ||| ||||||||||| |||| |||||||||||||| ||||| |||||||||||||||| Sbjct 667903 TCCTGCCGTTTACCCATGCTTCATTGAATTTCTTCACATTGACTTTCAGAGCACTGGGCA 667844 Query 514 GAAATCACATTGCGTCAACATCA 536 |||| ||||| | || |||||| Sbjct 667843 GAAAACACATCACATC-ACATCA 667822 >seq285118 Length=5445708 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 ||||| | |||| ||||| | |||| |||| ||| ||||||||||| |||||||||| Sbjct 267045 TGCTCCATGGGAGGTTTCTATCCTCCCTGAGCTCCCTTTAGGACACCTT-GTTATGGTTT 266987 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| | ||| ||||| |||||||||||||||||| |||| Sbjct 266986 GACAGGTACACCGTCCCAGTCAAACTCCCCACCTGACAGTGTC 266944 >seq285415 Length=1572009 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||||| |||| ||| | ||||||||| ||||| ||| Sbjct 563464 CTTCTGCTCCATGGGAGGTTTCTGCCCTCCCTGACCTCGCCTTAGGACTCCTGCATTACA 563523 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| | ||||| | |||||||||||| ||||| |||| Sbjct 563524 GTTTGACAGGTGTACAGCCCCCGTCAAACTCCCCACTTGACACTGTC 563570 >seq282887 Length=3162564 Score = 84.2 bits (92), Expect = 7e-14 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 ||||||||||||||| |||||||| |||| ||||||| ||||||||||||||| |||| Sbjct 1607226 CATAGTTACTCCCGCAATTTACCCGTGCTTCATTGAATTGCTTCACTTTGACATTTAGAG 1607285 Query 505 CACT 508 |||| Sbjct 1607286 CACT 1607289 >seq138791 Length=607 Score = 75.2 bits (82), Expect = 4e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||| | ||||||||||||||||||| ||||| |||| ||| ||||||||| ||||||| Sbjct 61 TGAGCTCGCCTTAGGACACCTGCGTTACGGTTTGACAGGTGTACCGCCCCAGTCAAACTC 2 Query 98 C 98 | Sbjct 1 C 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630513189760