Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq282887 87.8 3e-15 seq286513 77.0 5e-12 seq283893 77.0 5e-12 seq285118 73.4 6e-11 >seq282887 Length=3162564 Score = 87.8 bits (96), Expect = 3e-15 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||||||||||| | |||||| | ||||| | || | || |||| || || || | Sbjct 2875140 GAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAAGAGCCAATGGGG 2875197 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||| ||||| |||||||||||||||||| Sbjct 2875198 CAAAGCTACCATCTGCGGAATTATGACTGAATGCCTCTAAGTCAGAATCC 2875247 >seq286513 Length=8022403 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || | |||||||||||||| |||||||| |||||||||||||| Sbjct 1803937 TGGCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 1803878 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 1803877 GTCAGAATCC 1803868 >seq283893 Length=4807905 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| ||||||||||| || Sbjct 1362861 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCCAA 1362920 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 1362921 GTCAGAATCC 1362930 Score = 73.4 bits (80), Expect = 6e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| ||||||||||||| Sbjct 1362802 TGGCTGAGGAGTCAATGGGGCGAAGCTACCATCTGTGGGATTATGATTGAACGCCTCTAA 1362743 Query 105 GTCAGAAT 112 |||||||| Sbjct 1362742 GTCAGAAT 1362735 >seq285118 Length=5445708 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 8/114 (7%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| ||| | || || || | Sbjct 170236 GTACGAGAGGAACCGCCGG-TTCAGAC-ATTTGGTGCTTGG------CCGAGGAGCCAAT 170287 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 170288 GGGCTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 170341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816925383680