Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq282887 87.8 3e-15
seq286513 77.0 5e-12
seq283893 77.0 5e-12
seq285118 73.4 6e-11
>seq282887
Length=3162564
Score = 87.8 bits (96), Expect = 3e-15
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64
|||||||||||| | |||||| | ||||| | || | || |||| || || || |
Sbjct 2875140 GAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAAGAGCCAATGGGG 2875197
Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||| ||||| ||||||||||||||||||
Sbjct 2875198 CAAAGCTACCATCTGCGGAATTATGACTGAATGCCTCTAAGTCAGAATCC 2875247
>seq286513
Length=8022403
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || | |||||||||||||| |||||||| ||||||||||||||
Sbjct 1803937 TGGCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 1803878
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 1803877 GTCAGAATCC 1803868
>seq283893
Length=4807905
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || |||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1362861 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCCAA 1362920
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 1362921 GTCAGAATCC 1362930
Score = 73.4 bits (80), Expect = 6e-11
Identities = 57/68 (84%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || |||||||||||||||| |||||||| |||||||||||||
Sbjct 1362802 TGGCTGAGGAGTCAATGGGGCGAAGCTACCATCTGTGGGATTATGATTGAACGCCTCTAA 1362743
Query 105 GTCAGAAT 112
||||||||
Sbjct 1362742 GTCAGAAT 1362735
>seq285118
Length=5445708
Score = 73.4 bits (80), Expect = 6e-11
Identities = 86/114 (75%), Gaps = 8/114 (7%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| ||| | || || || |
Sbjct 170236 GTACGAGAGGAACCGCCGG-TTCAGAC-ATTTGGTGCTTGG------CCGAGGAGCCAAT 170287
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 170288 GGGCTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 170341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 816925383680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |