Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03] 286,620 sequences; 1,931,078,847 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq285083 306 1e-80 seq285827 205 3e-50 seq273770 199 1e-48 seq285679 168 2e-39 seq286424 163 9e-38 seq284114 140 1e-30 seq285419 136 1e-29 seq284373 134 4e-29 seq283960 131 5e-28 seq283893 114 4e-23 seq283437 114 4e-23 seq62268 95.1 4e-17 seq284313 87.8 5e-15 seq284021 80.6 8e-13 seq245068 80.6 8e-13 >seq285083 Length=8456797 Score = 306 bits (338), Expect = 1e-80 Identities = 387/517 (75%), Gaps = 20/517 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| ||||| | | | |||||| ||||||| | ||| |||||| |||| Sbjct 6537399 GTACTCATTCCAGTTACAGGGTCTCGAAAGAGTCCTGTAT---TGTTTTTTGTCATTACC 6537455 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | ||| ||||||| ||||||||| || |||||||| || |||||||| |||||||| | Sbjct 6537456 TACCCAGGTCGGGAGTGGGTAATTAGCATGCCTGCTGACTGCCTTGGATTTGGTAGCCAT 6537515 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||| || ||||||||||||||| |||| || |||| | |||| | | |||| || Sbjct 6537516 TTCCTAGACTCCCTCTCCGGAATTGAACTCTGATTCTTTATAACCCATGGTCACCACCGT 6537575 Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||| || | |||||| |||||||||||||||||| ||||||||| | | || | Sbjct 6537576 GGGCACAGGA-AGTACCATAGAAAGTTGATAGGGCAGACATTTGAATGCATTGTTGCTGC 6537634 Query 239 CTCAAGGCCATGCGATTCG-TTAAGTTATTAT-GAATCACCAAGGAGCCCCGAAGGGC-- 294 | || || | |||| | ||| || | | || ||||||| | | | | | || Sbjct 6537635 CATGGGGGCAAGTGATTGGCCCAAGATAATCTAGAGTCACCAAAGCGGCTGGGTGAGCCC 6537694 Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGT 349 ||||| |||| | | |||||| ||| | | || || ||| | | || || |||||| Sbjct 6537695 AGGTTGG-TTTTGGTTTGATAAATGCACGCATCCCTGGAGGTCAGTGCTTGTTGGCATGT 6537753 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATA 407 |||||||||||||||||||| ||| ||| ||| | || | |||||| ||| ||| Sbjct 6537754 ATTAGCTCTAGAATTACCACAGTTGACCAAGTAAGGCTTGGAATGATCAAAGGAACCATA 6537813 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 ||||||||||||| |||||||||||||||||||| | | ||||||||||| ||| Sbjct 6537814 ACTGATTTAATGAACCATTCGCAGTTTCACTGTAACGCCCATGTGTACTTAGACATTCAT 6537873 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| || |||||||||| Sbjct 6537874 GGCTTAATCTTTGAGACAAGCAT-TG-CTACTGGCAG 6537908 >seq285827 Length=2540984 Score = 205 bits (226), Expect = 3e-50 Identities = 336/472 (71%), Gaps = 17/472 (4%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||| || ||||| | || | || | |||||||||| || |||| |||||| Sbjct 1415496 TATTTTATGTCATTATCTCCCTGGGTTGAGAGTCGGTAATTTGCATGCTTGCTACCTTCC 1415437 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||| | | ||| | |||||||||||| | | ||| ||||||| |||||| | | Sbjct 1415436 TTGGATGCGTTGGCCAGTGCTCAGGCTCCCTTTTCAGAACTGAACCCTGATTCCCTATCA 1415377 Query 163 CCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 || ||| || ||||||||| || | || | || | || |||||||||||| ||| Sbjct 1415376 TCCATTGTCACAATGGTAGGCACAGGAAG-TATCGTCAAGAGCTGATAGGGCAGATATTC 1415318 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAA 279 ||| || | | | | | || ||||| || | | | ||||| || ||||||| Sbjct 1415317 AAATTAATTGTTGTCACCATAGGGGCATGCAGTTGACCTGAGGTTATCTAGAGTCACCAA 1415258 Query 280 GGAGCCCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC--G 334 || || | | | ||| ||||| | | |||||| || || ||| || | | Sbjct 1415257 GG-GCTGGGTAAATTTGGGTTAGTTTTGGTT-TGATAAATGCAATCC--CCGGAGGCCAG 1415202 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACT 392 | | || | ||||||||| |||||||| ||||| |||||||| || | || | Sbjct 1415201 AGCTCATTGGTATGTATTAGGTCTAGAATGACCACAGTTATCCAAATAAGGCTTGGAGCA 1415142 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 | |||| ||| |||| || |||||||||||||| || |||| || ||| | | | | Sbjct 1415141 ACCAAAGGAACCATAAATGTTTTAATGAGCCATTTGCCGTTTTACCGTACCGCTCGGTG- 1415083 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||||||||||||||||||||||| || ||||||| Sbjct 1415082 TACTTAGACAAGCATGGCTTAATCTTTGAGACAAGCATATG-CTGCTGGCAG 1415032 >seq273770 Length=8170 Score = 199 bits (220), Expect = 1e-48 Identities = 182/227 (80%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||| ||||||||||| | | |||||| ||||||| ||||| ||||||||||| Sbjct 6268 GTACTCTTTCCAATTACAGGGCTTTGAAAGAGTCCTGTATTGCTATTTTTTGTCACTACC 6327 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||| || |||| |||||||||||| ||||||||||||||||||||||||||||| | Sbjct 6328 TCCCCAGGTTGGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 6387 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||| ||||||| ||||| |||||| |||| || | ||| || | |||||||| Sbjct 6388 TTCTCAGGCTTCCTCTCCAGAATCAAACCCTGATTCTCCATCACCTGTGGTCACCATGGT 6447 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 | | || ||||||||| ||||||| | ||| | ||| |||| Sbjct 6448 AAG-CATAGGTTTACCATCGAGAGTTGATGGAGCAAATATTCAAATG 6493 >seq285679 Length=2120717 Score = 168 bits (186), Expect = 2e-39 Identities = 192/253 (76%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| || | |||||||| ||||||| | ||| | ||||||| Sbjct 1451866 GTACTCATTTCAATTACAGAGCCTCAAAAGAGTCCTGTAT---TGTTTTTCATCACTACT 1451922 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| | || |||| ||||||| |||| ||||| |||||||||||||||||||||| | Sbjct 1451923 GCCCTGGGTTGGGAATGGGTAACTTGCATGCCTGTTGCCTTCCTTGGATGTGGTAGCTTT 1451982 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || |||||||||| ||| ||||||||||||| |||| | ||| ||| | | ||| || | Sbjct 1451983 TTTTCAGGCTCCCGCTCTGGAATCGAACCCTGATTCTCAGTTGCCCATGGTCACCCTGAT 1452042 Query 180 A-GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 | || || | || || |||| ||||||||||||| || |||| | |||| | Sbjct 1452043 AGGGACAGGA-AATATAATTGAAAATTGATAGGGCAGACTTTCAAATGCATTGTCGCTGC 1452101 Query 239 CTCAAGGCCATGC 251 | || || ||||| Sbjct 1452102 CACAGGGGCATGC 1452114 >seq286424 Length=7150568 Score = 163 bits (180), Expect = 9e-38 Identities = 176/228 (77%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| ||| | | || |||| |||||||| ||||| | ||||||| Sbjct 5492398 GTACTCATTCCAGTTATAGGGCCTTGTAAGAACCCTGTATTGTTATTTTTCCTCACTACT 5492457 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | || ||| ||| |||||||| ||||| | |||||||||||| ||||||| || Sbjct 5492458 TCCCTGGATCAGGAGTGGATAATTTGCATGCCTGTTTCCTTCCTTGGATATGGTAGCTGT 5492517 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||| |||||| |||||| ||| ||| | |||| | | | ||||||| Sbjct 5492518 TTCTCA-GCTCCCTCTCTGGAATCCAACCCTGATTTCCCATCACCCATGGTTGCCATGGT 5492576 Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 |||| || | | |||||| || |||||| |||| | ||| ||||| Sbjct 5492577 AGGCACAGGAAGC-ACCATCCGAAATTGATAAGGCAAACATTCGAATG 5492623 >seq284114 Length=1870514 Score = 140 bits (154), Expect = 1e-30 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAG-ACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||| || || | || | ||| ||||||| ||||| | ||||||||||| Sbjct 1600794 CTCATTCCAGTTCCAGGGACTTGACAGAATCCTGTATTGTTATTTTTCATCACTACCTCC 1600853 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || ||| || |||| ||||| | |||| |||||||||||||||| ||||| ||||| Sbjct 1600854 CCAGGTCAGGGGTGGGAAATTTT-GTACCTGGTGCCTTCCTTGGATGTAGTAGCTGTTTC 1600912 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||| ||||||| || || |||| |||| |||| |||| | | ||||| |||| Sbjct 1600913 TCAGGATCCCTCTTTATTATTGAGCCCTGATTCACCGTCACCCATGGTCACCATAATAGG 1600972 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 | |||||||||||||||| |||||||| ||| ||||| Sbjct 1600973 CATAGGAAGTACCATCGAAAGTTGAGAGGGCAGATATTCGAATG 1601016 >seq285419 Length=9218328 Score = 136 bits (150), Expect = 1e-29 Identities = 126/156 (81%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTAC-CACGGTTATCCATGTAGTAAGGT----ACT-ATCAA 397 ||||| |||||||||||||||| | | |||||||| ||||||| | | ||||| Sbjct 138156 GCATGAATTAGCTCTAGAATTAATCTCAGTTATCCA---AGTAAGGCTTGGAGTGATCAA 138100 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| |||||||||||||||| ||||| |||||||||||||| | | | ||||| Sbjct 138099 AGGAACCATAACTGATTTAATGAACCATTTGCAGTTTCACTGTAATGCCCGTGTGTACTT 138040 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||| |||||||||||||||||||||| ||| Sbjct 138039 AGACATGCAAGGCTTAATCTTTGAGACAAGCAAATG 138004 >seq284373 Length=2925531 Score = 134 bits (148), Expect = 4e-29 Identities = 99/114 (87%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 || ||||||| ||||| | ||||||| |||||| || || | ||||||||||| ||| Sbjct 1393187 AGTCCTGTATTGTTATTTTTCGTCACTATCTCCCCAGGTAGG-AGTGGGTAATTTGTGCG 1393245 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATC 143 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1393246 CCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCATCTCCGGAATC 1393299 >seq283960 Length=8219379 Score = 131 bits (144), Expect = 5e-28 Identities = 143/184 (78%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| ||||| |||||||||||||||| ||| |||| |||||||| ||||| ||||| Sbjct 4159542 TGTATTGTTATTTTTTGTCACTACCTCCCCATGTTGGGAGTGGGTAATGTGCGCACCTGC 4159483 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||| |||||||||| |||| |||||| |||| |||||| ||| | |||| | | | Sbjct 4159482 CACCTTTCTTGGATGTGCTAGCTGTTTCTACGGCTTCCTCTCTGGATTAAAACCTTGAAT 4159423 Query 155 CCCCGTTACCCGTTGAT-ACCATGGTA-GGCCAC--TATCCTACCATCGAAAGTTGATAG 210 ||| | ||| | |||| ||||||| | |||||| | | | || |||||||||||| Sbjct 4159422 CCCTGACACCTG-TGATCACCATGGAAGGGCCACAGGAAGC-ATGATTGAAAGTTGATAG 4159365 Query 211 GGCA 214 |||| Sbjct 4159364 GGCA 4159361 >seq283893 Length=4807905 Score = 114 bits (126), Expect = 4e-23 Identities = 122/155 (79%), Gaps = 12/155 (8%) Strand=Plus/Plus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351 ||||||||| ||| |||||| ||| | | || || ||| | | | | | ||||||| Sbjct 3113563 GTTGGTTTTGG-TCTGATAAATGCACGCATCCCCGGAGGTCAGCGCTCGTCGGCATGTAT 3113621 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT----ACT-ATCAAATAAACGAT 406 |||| ||||||||||||| |||||||| ||||||| | | |||||| ||| || Sbjct 3113622 TAGCACTAGAATTACCACAGTTATCCA---AGTAAGGCTTGGAGTGATCAAAGGAACCAT 3113678 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 ||||||||||||||||||||||||||||||||||| Sbjct 3113679 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 3113713 >seq283437 Length=7518123 Score = 114 bits (126), Expect = 4e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||| |||| Sbjct 5147694 CCTGTATTGTTATTTTTTGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCCTGCCT 5147635 Query 93 GCTGCCTTCCTTGGATGTGGTAG 115 ||||||||||||||||||||||| Sbjct 5147634 GCTGCCTTCCTTGGATGTGGTAG 5147612 >seq62268 Length=231 Score = 95.1 bits (104), Expect = 4e-17 Identities = 168/241 (70%), Gaps = 22/241 (9%) Strand=Plus/Plus Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 || |||||||||||| |||| |||| |||||| | ||||| |||||| | Sbjct 1 CCAGAATCGAACCCTGATTCTCCGTCACCCGTGGTCACCATAGTAGGCA----------C 50 Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT- 254 | | |||||||||||||||| ||||||||| | |||||| | | || | |||||| Sbjct 51 A--GGAAGTTGATAGGGCAGACATTTGAATGCATTGTCGCCGCCACGGGGGCGTGCGATC 108 Query 255 -TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GTTGGTTTTTTATCT 309 | | | ||||| || | ||||| | | || | | || ||||| |||| ||| Sbjct 109 GGCCTGAGGTTATCTAGAGTTACCAAAGCGGCCGGGTGAGCCCAGGTTGG-TTTTGGTCT 167 Query 310 AATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTAC 366 |||||| ||| | | || || ||| | | | | ||||||||||||||||||||||| Sbjct 168 CATAAATGCACACATCCCCGGAGGTCAGCGCTCGTCGGCATGTATTAGCTCTAGAATTAC 227 Query 367 C 367 | Sbjct 228 C 228 >seq284313 Length=4517532 Score = 87.8 bits (96), Expect = 5e-15 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACG 404 ||||||||||||||||||||||| |||||||| ||| | || | |||||| ||| Sbjct 49208 TGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGGCTTGGAGCAATCAAAGGAACC 49149 Query 405 ATAACTGATTTAATGAGCCATT 426 |||||||||||||||||||||| Sbjct 49148 ATAACTGATTTAATGAGCCATT 49127 >seq284021 Length=4094669 Score = 80.6 bits (88), Expect = 8e-13 Identities = 81/108 (75%), Gaps = 12/108 (11%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 ||||||||||| | |||||||||||||||||| ||||||||| || ||| Sbjct 2832010 GGGTAATTTGCACACCTGCTGCCTTCCTTGGACGTGGTAGCCATT------------TCT 2832057 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 || |||||||||| |||| || | | |||| | |||||||||||| Sbjct 2832058 CCAGAATCGAACCTGGATTCTCCATCATCCGTGGTCACCATGGTAGGC 2832105 >seq245068 Length=973 Score = 80.6 bits (88), Expect = 8e-13 Identities = 51/54 (94%), Gaps = 1/54 (2%) Strand=Plus/Plus Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| |||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 879 TATATTTAGACATGCATGGCTTAATCTTTGAGACAAGAATATG-CTACTGGCAG 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506070891520