Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apalone_20spinifera_20[genbank_20GCA_5F000385615.1_202013-05-03]
286,620 sequences; 1,931,078,847 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq285083 306 1e-80
seq285827 205 3e-50
seq273770 199 1e-48
seq285679 168 2e-39
seq286424 163 9e-38
seq284114 140 1e-30
seq285419 136 1e-29
seq284373 134 4e-29
seq283960 131 5e-28
seq283893 114 4e-23
seq283437 114 4e-23
seq62268 95.1 4e-17
seq284313 87.8 5e-15
seq284021 80.6 8e-13
seq245068 80.6 8e-13
>seq285083
Length=8456797
Score = 306 bits (338), Expect = 1e-80
Identities = 387/517 (75%), Gaps = 20/517 (4%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||| ||||| | | | |||||| ||||||| | ||| |||||| ||||
Sbjct 6537399 GTACTCATTCCAGTTACAGGGTCTCGAAAGAGTCCTGTAT---TGTTTTTTGTCATTACC 6537455
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| ||| ||||||| ||||||||| || |||||||| || |||||||| |||||||| |
Sbjct 6537456 TACCCAGGTCGGGAGTGGGTAATTAGCATGCCTGCTGACTGCCTTGGATTTGGTAGCCAT 6537515
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
||| || ||||||||||||||| |||| || |||| | |||| | | |||| ||
Sbjct 6537516 TTCCTAGACTCCCTCTCCGGAATTGAACTCTGATTCTTTATAACCCATGGTCACCACCGT 6537575
Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238
||| || | |||||| |||||||||||||||||| ||||||||| | | || |
Sbjct 6537576 GGGCACAGGA-AGTACCATAGAAAGTTGATAGGGCAGACATTTGAATGCATTGTTGCTGC 6537634
Query 239 CTCAAGGCCATGCGATTCG-TTAAGTTATTAT-GAATCACCAAGGAGCCCCGAAGGGC-- 294
| || || | |||| | ||| || | | || ||||||| | | | | | ||
Sbjct 6537635 CATGGGGGCAAGTGATTGGCCCAAGATAATCTAGAGTCACCAAAGCGGCTGGGTGAGCCC 6537694
Query 295 --GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGT 349
||||| |||| | | |||||| ||| | | || || ||| | | || || ||||||
Sbjct 6537695 AGGTTGG-TTTTGGTTTGATAAATGCACGCATCCCTGGAGGTCAGTGCTTGTTGGCATGT 6537753
Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATA 407
|||||||||||||||||||| ||| ||| ||| | || | |||||| ||| |||
Sbjct 6537754 ATTAGCTCTAGAATTACCACAGTTGACCAAGTAAGGCTTGGAATGATCAAAGGAACCATA 6537813
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467
||||||||||||| |||||||||||||||||||| | | ||||||||||| |||
Sbjct 6537814 ACTGATTTAATGAACCATTCGCAGTTTCACTGTAACGCCCATGTGTACTTAGACATTCAT 6537873
Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||| || ||||||||||
Sbjct 6537874 GGCTTAATCTTTGAGACAAGCAT-TG-CTACTGGCAG 6537908
>seq285827
Length=2540984
Score = 205 bits (226), Expect = 3e-50
Identities = 336/472 (71%), Gaps = 17/472 (4%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| ||||| || ||||| | || | || | |||||||||| || |||| ||||||
Sbjct 1415496 TATTTTATGTCATTATCTCCCTGGGTTGAGAGTCGGTAATTTGCATGCTTGCTACCTTCC 1415437
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||| | | ||| | |||||||||||| | | ||| ||||||| |||||| | |
Sbjct 1415436 TTGGATGCGTTGGCCAGTGCTCAGGCTCCCTTTTCAGAACTGAACCCTGATTCCCTATCA 1415377
Query 163 CCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221
|| ||| || ||||||||| || | || | || | || |||||||||||| |||
Sbjct 1415376 TCCATTGTCACAATGGTAGGCACAGGAAG-TATCGTCAAGAGCTGATAGGGCAGATATTC 1415318
Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAA 279
||| || | | | | | || ||||| || | | | ||||| || |||||||
Sbjct 1415317 AAATTAATTGTTGTCACCATAGGGGCATGCAGTTGACCTGAGGTTATCTAGAGTCACCAA 1415258
Query 280 GGAGCCCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTC--G 334
|| || | | | ||| ||||| | | |||||| || || ||| || | |
Sbjct 1415257 GG-GCTGGGTAAATTTGGGTTAGTTTTGGTT-TGATAAATGCAATCC--CCGGAGGCCAG 1415202
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACT 392
| | || | ||||||||| |||||||| ||||| |||||||| || | || |
Sbjct 1415201 AGCTCATTGGTATGTATTAGGTCTAGAATGACCACAGTTATCCAAATAAGGCTTGGAGCA 1415142
Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452
| |||| ||| |||| || |||||||||||||| || |||| || ||| | | | |
Sbjct 1415141 ACCAAAGGAACCATAAATGTTTTAATGAGCCATTTGCCGTTTTACCGTACCGCTCGGTG- 1415083
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1415082 TACTTAGACAAGCATGGCTTAATCTTTGAGACAAGCATATG-CTGCTGGCAG 1415032
>seq273770
Length=8170
Score = 199 bits (220), Expect = 1e-48
Identities = 182/227 (80%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||| ||||||||||| | | |||||| ||||||| ||||| |||||||||||
Sbjct 6268 GTACTCTTTCCAATTACAGGGCTTTGAAAGAGTCCTGTATTGCTATTTTTTGTCACTACC 6327
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||||| || |||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 6328 TCCCCAGGTTGGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 6387
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|||||||||| ||||||| ||||| |||||| |||| || | ||| || | ||||||||
Sbjct 6388 TTCTCAGGCTTCCTCTCCAGAATCAAACCCTGATTCTCCATCACCTGTGGTCACCATGGT 6447
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
| | || ||||||||| ||||||| | ||| | ||| ||||
Sbjct 6448 AAG-CATAGGTTTACCATCGAGAGTTGATGGAGCAAATATTCAAATG 6493
>seq285679
Length=2120717
Score = 168 bits (186), Expect = 2e-39
Identities = 192/253 (76%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||||||||| |||||||| || | |||||||| ||||||| | ||| | |||||||
Sbjct 1451866 GTACTCATTTCAATTACAGAGCCTCAAAAGAGTCCTGTAT---TGTTTTTCATCACTACT 1451922
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||| | || |||| ||||||| |||| ||||| |||||||||||||||||||||| |
Sbjct 1451923 GCCCTGGGTTGGGAATGGGTAACTTGCATGCCTGTTGCCTTCCTTGGATGTGGTAGCTTT 1451982
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|| |||||||||| ||| ||||||||||||| |||| | ||| ||| | | ||| || |
Sbjct 1451983 TTTTCAGGCTCCCGCTCTGGAATCGAACCCTGATTCTCAGTTGCCCATGGTCACCCTGAT 1452042
Query 180 A-GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238
| || || | || || |||| ||||||||||||| || |||| | |||| |
Sbjct 1452043 AGGGACAGGA-AATATAATTGAAAATTGATAGGGCAGACTTTCAAATGCATTGTCGCTGC 1452101
Query 239 CTCAAGGCCATGC 251
| || || |||||
Sbjct 1452102 CACAGGGGCATGC 1452114
>seq286424
Length=7150568
Score = 163 bits (180), Expect = 9e-38
Identities = 176/228 (77%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||| ||| | | || |||| |||||||| ||||| | |||||||
Sbjct 5492398 GTACTCATTCCAGTTATAGGGCCTTGTAAGAACCCTGTATTGTTATTTTTCCTCACTACT 5492457
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||| | || ||| ||| |||||||| ||||| | |||||||||||| ||||||| ||
Sbjct 5492458 TCCCTGGATCAGGAGTGGATAATTTGCATGCCTGTTTCCTTCCTTGGATATGGTAGCTGT 5492517
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
|||||| |||||||||| |||||| |||||| ||| ||| | |||| | | | |||||||
Sbjct 5492518 TTCTCA-GCTCCCTCTCTGGAATCCAACCCTGATTTCCCATCACCCATGGTTGCCATGGT 5492576
Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
|||| || | | |||||| || |||||| |||| | ||| |||||
Sbjct 5492577 AGGCACAGGAAGC-ACCATCCGAAATTGATAAGGCAAACATTCGAATG 5492623
>seq284114
Length=1870514
Score = 140 bits (154), Expect = 1e-30
Identities = 167/224 (75%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 4 CTCATTCCAATTACAAG-ACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||| || || | || | ||| ||||||| ||||| | |||||||||||
Sbjct 1600794 CTCATTCCAGTTCCAGGGACTTGACAGAATCCTGTATTGTTATTTTTCATCACTACCTCC 1600853
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
|| ||| || |||| ||||| | |||| |||||||||||||||| ||||| |||||
Sbjct 1600854 CCAGGTCAGGGGTGGGAAATTTT-GTACCTGGTGCCTTCCTTGGATGTAGTAGCTGTTTC 1600912
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
||||| ||||||| || || |||| |||| |||| |||| | | ||||| ||||
Sbjct 1600913 TCAGGATCCCTCTTTATTATTGAGCCCTGATTCACCGTCACCCATGGTCACCATAATAGG 1600972
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
| |||||||||||||||| |||||||| ||| |||||
Sbjct 1600973 CATAGGAAGTACCATCGAAAGTTGAGAGGGCAGATATTCGAATG 1601016
>seq285419
Length=9218328
Score = 136 bits (150), Expect = 1e-29
Identities = 126/156 (81%), Gaps = 9/156 (6%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTAC-CACGGTTATCCATGTAGTAAGGT----ACT-ATCAA 397
||||| |||||||||||||||| | | |||||||| ||||||| | | |||||
Sbjct 138156 GCATGAATTAGCTCTAGAATTAATCTCAGTTATCCA---AGTAAGGCTTGGAGTGATCAA 138100
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457
| ||| |||||||||||||||| ||||| |||||||||||||| | | | |||||
Sbjct 138099 AGGAACCATAACTGATTTAATGAACCATTTGCAGTTTCACTGTAATGCCCGTGTGTACTT 138040
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493
||||||||| |||||||||||||||||||||| |||
Sbjct 138039 AGACATGCAAGGCTTAATCTTTGAGACAAGCAAATG 138004
>seq284373
Length=2925531
Score = 134 bits (148), Expect = 4e-29
Identities = 99/114 (87%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89
|| ||||||| ||||| | ||||||| |||||| || || | ||||||||||| |||
Sbjct 1393187 AGTCCTGTATTGTTATTTTTCGTCACTATCTCCCCAGGTAGG-AGTGGGTAATTTGTGCG 1393245
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATC 143
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1393246 CCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCATCTCCGGAATC 1393299
>seq283960
Length=8219379
Score = 131 bits (144), Expect = 5e-28
Identities = 143/184 (78%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94
||||| ||||| |||||||||||||||| ||| |||| |||||||| ||||| |||||
Sbjct 4159542 TGTATTGTTATTTTTTGTCACTACCTCCCCATGTTGGGAGTGGGTAATGTGCGCACCTGC 4159483
Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154
|||| |||||||||| |||| |||||| |||| |||||| ||| | |||| | | |
Sbjct 4159482 CACCTTTCTTGGATGTGCTAGCTGTTTCTACGGCTTCCTCTCTGGATTAAAACCTTGAAT 4159423
Query 155 CCCCGTTACCCGTTGAT-ACCATGGTA-GGCCAC--TATCCTACCATCGAAAGTTGATAG 210
||| | ||| | |||| ||||||| | |||||| | | | || ||||||||||||
Sbjct 4159422 CCCTGACACCTG-TGATCACCATGGAAGGGCCACAGGAAGC-ATGATTGAAAGTTGATAG 4159365
Query 211 GGCA 214
||||
Sbjct 4159364 GGCA 4159361
>seq283893
Length=4807905
Score = 114 bits (126), Expect = 4e-23
Identities = 122/155 (79%), Gaps = 12/155 (8%)
Strand=Plus/Plus
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351
||||||||| ||| |||||| ||| | | || || ||| | | | | | |||||||
Sbjct 3113563 GTTGGTTTTGG-TCTGATAAATGCACGCATCCCCGGAGGTCAGCGCTCGTCGGCATGTAT 3113621
Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT----ACT-ATCAAATAAACGAT 406
|||| ||||||||||||| |||||||| ||||||| | | |||||| ||| ||
Sbjct 3113622 TAGCACTAGAATTACCACAGTTATCCA---AGTAAGGCTTGGAGTGATCAAAGGAACCAT 3113678
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441
|||||||||||||||||||||||||||||||||||
Sbjct 3113679 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 3113713
>seq283437
Length=7518123
Score = 114 bits (126), Expect = 4e-23
Identities = 75/83 (90%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 33 CCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92
||||||| ||||| ||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 5147694 CCTGTATTGTTATTTTTTGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCCTGCCT 5147635
Query 93 GCTGCCTTCCTTGGATGTGGTAG 115
|||||||||||||||||||||||
Sbjct 5147634 GCTGCCTTCCTTGGATGTGGTAG 5147612
>seq62268
Length=231
Score = 95.1 bits (104), Expect = 4e-17
Identities = 168/241 (70%), Gaps = 22/241 (9%)
Strand=Plus/Plus
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195
|| |||||||||||| |||| |||| |||||| | ||||| |||||| |
Sbjct 1 CCAGAATCGAACCCTGATTCTCCGTCACCCGTGGTCACCATAGTAGGCA----------C 50
Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT- 254
| | |||||||||||||||| ||||||||| | |||||| | | || | ||||||
Sbjct 51 A--GGAAGTTGATAGGGCAGACATTTGAATGCATTGTCGCCGCCACGGGGGCGTGCGATC 108
Query 255 -TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GTTGGTTTTTTATCT 309
| | | ||||| || | ||||| | | || | | || ||||| |||| |||
Sbjct 109 GGCCTGAGGTTATCTAGAGTTACCAAAGCGGCCGGGTGAGCCCAGGTTGG-TTTTGGTCT 167
Query 310 AATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTAC 366
|||||| ||| | | || || ||| | | | | |||||||||||||||||||||||
Sbjct 168 CATAAATGCACACATCCCCGGAGGTCAGCGCTCGTCGGCATGTATTAGCTCTAGAATTAC 227
Query 367 C 367
|
Sbjct 228 C 228
>seq284313
Length=4517532
Score = 87.8 bits (96), Expect = 5e-15
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACG 404
||||||||||||||||||||||| |||||||| ||| | || | |||||| |||
Sbjct 49208 TGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGGCTTGGAGCAATCAAAGGAACC 49149
Query 405 ATAACTGATTTAATGAGCCATT 426
||||||||||||||||||||||
Sbjct 49148 ATAACTGATTTAATGAGCCATT 49127
>seq284021
Length=4094669
Score = 80.6 bits (88), Expect = 8e-13
Identities = 81/108 (75%), Gaps = 12/108 (11%)
Strand=Plus/Plus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
||||||||||| | |||||||||||||||||| ||||||||| || |||
Sbjct 2832010 GGGTAATTTGCACACCTGCTGCCTTCCTTGGACGTGGTAGCCATT------------TCT 2832057
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183
|| |||||||||| |||| || | | |||| | ||||||||||||
Sbjct 2832058 CCAGAATCGAACCTGGATTCTCCATCATCCGTGGTCACCATGGTAGGC 2832105
>seq245068
Length=973
Score = 80.6 bits (88), Expect = 8e-13
Identities = 51/54 (94%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 879 TATATTTAGACATGCATGGCTTAATCTTTGAGACAAGAATATG-CTACTGGCAG 931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1506070891520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |